PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa011038 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | MIKC_MADS | ||||||||||||
Protein Properties | Length: 177aa MW: 20442.3 Da PI: 6.5198 | ||||||||||||
Description | MIKC_MADS family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.5 | 2.3e-25 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienks r+vtfskRr+g++KKA LS LCda+va+i+fs gkly ++s Lsa011038 9 KRIENKSSRSVTFSKRRTGLIKKARHLSLLCDADVALIVFSAPGKLYQFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 27.8 | 1e-10 | 98 | 158 | 22 | 82 |
K-box 22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 +k + e Lq+ R + ++ e+Lsl ++ qLe++L+++l + Rs+K++l ++ i++lq+ Lsa011038 98 TKFRTCKELLQEVDRLVEENNTEELSLTDMTQLEEELHDALVQTRSRKTQLKMDYISTLQE 158 56666677788888888888899************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.7E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.45 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.05E-34 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 9.55E-27 | 2 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 6.994 | 90 | 177 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 8.6E-7 | 98 | 159 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MGRRKLEIKR IENKSSRSVT FSKRRTGLIK KARHLSLLCD ADVALIVFSA PGKLYQFCSS 60 ASNSMAHLLA TYEKSRLEPE SGTIEGDDQD LELPLQCTKF RTCKELLQEV DRLVEENNTE 120 ELSLTDMTQL EEELHDALVQ TRSRKTQLKM DYISTLQEEV SFNIDFFKEK FKYPSHS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-17 | 1 | 83 | 1 | 80 | MEF2C |
5f28_B | 4e-17 | 1 | 83 | 1 | 80 | MEF2C |
5f28_C | 4e-17 | 1 | 83 | 1 | 80 | MEF2C |
5f28_D | 4e-17 | 1 | 83 | 1 | 80 | MEF2C |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023751297.1 | 1e-112 | MADS-box protein FLOWERING LOCUS C-like isoform X1 | ||||
TrEMBL | A0A2J6M5X2 | 1e-108 | A0A2J6M5X2_LACSA; Uncharacterized protein | ||||
STRING | XP_010682731.1 | 7e-43 | (Beta vulgaris) |