PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa011034
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GRAS
Protein Properties Length: 613aa    MW: 67805.1 Da    PI: 6.9643
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58693631PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-51459PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS322.86.9e-992396125373
       GRAS   5 LlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIle 104
                + ++Aea+++g+ e a +l++r+++ ++  g+p qRl ++++ AL++r++   +++++  ++s+++e   +e++ +++l+++ sP++k+++++aN+ Il+
  Lsa011034 239 ISDAAEAITDGKSEIAMELITRINQFSNALGTPEQRLGFHMASALRSRVSV--NSTAE-EQSSPATELYRKEHILSTQLLYDKSPCFKIAFMAANNVILQ 335
                5689*********************************************98..33332.233333334499***************************** PP

       GRAS 105 avege....ervHiiDfdisqGlQWpaLlqaLa.sRp..eg.ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                a+ g+    +r+H++Dfd+++GlQ++ Ll+++a +R+  +  p sl++T++++  +g +e+l+ +g+ L+++ ++lgv f +nvl   +l+dl+ + L +
  Lsa011034 336 ALLGSgrpeRRIHVVDFDVGHGLQYVYLLHEIAaARKidGViPISLKLTTFKDFGNGGSERLKLVGDGLRSLSNKLGVLFYYNVL-DFKLSDLNKQGLTI 434
                **99888889**********************977877533366*********9999**************************95.669*********** PP

       GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                +++E+laVn++++l +l+desv++e+ rdevL+ vk+lsP vv+vveqe++ n++sF +r+ + ++yy+++++slea++pr++ er+k+E+  l+r+i n
  Lsa011034 435 ENEEVLAVNFAFKLSKLPDESVTTENLRDEVLRRVKDLSPAVVTVVEQELNANTASFTARVNDLFSYYTSFLNSLEATIPRTNPERVKIEEG-LSRRIFN 533
                ********************************************************************************************.******* PP

       GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaW 373
                 vaceg++r+er+e ++kWr+rl++aGF + p+s+ +a++ k+ l+     + g++v+e+sg + +gW++rpL++vSaW
  Lsa011034 534 SVACEGRDRVERCEVFGKWRARLRMAGFDSKPVSQLTAESLKSKLNSWTrgNLGFTVKEDSGGISFGWMGRPLTVVSAW 612
                *********************************************998865678************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.416209591IPR005202Transcription factor GRAS
PfamPF035142.4E-96239612IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MSSGFSGGFP DFFNANGGGV SNVSGRSMSM MNVNRSNYNQ QVNYRSPLAG ILSDSLSPVG  60
GSRSDFDGKR SLAEFQQQHQ LRQQAAVYMR NVKPRAYNQQ TDFLSSPEVS SVSSISSSSV  120
SRYGGQIPQQ LRPNFNGVMS NYQINDYSPA KQLPKNQEME TKMLNRLQEL EKELLLDDDD  180
GEHDAVSVIT DTEWSETIQK LLNPLQAQNP DNTVAPSPTT SSTSSSASSS ATVSPKQFIS  240
DAAEAITDGK SEIAMELITR INQFSNALGT PEQRLGFHMA SALRSRVSVN STAEEQSSPA  300
TELYRKEHIL STQLLYDKSP CFKIAFMAAN NVILQALLGS GRPERRIHVV DFDVGHGLQY  360
VYLLHEIAAA RKIDGVIPIS LKLTTFKDFG NGGSERLKLV GDGLRSLSNK LGVLFYYNVL  420
DFKLSDLNKQ GLTIENEEVL AVNFAFKLSK LPDESVTTEN LRDEVLRRVK DLSPAVVTVV  480
EQELNANTAS FTARVNDLFS YYTSFLNSLE ATIPRTNPER VKIEEGLSRR IFNSVACEGR  540
DRVERCEVFG KWRARLRMAG FDSKPVSQLT AESLKSKLNS WTRGNLGFTV KEDSGGISFG  600
WMGRPLTVVS AWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-4126961337375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023740396.10.0scarecrow-like protein 8
TrEMBLA0A2J6K1120.0A0A2J6K112_LACSA; Uncharacterized protein
STRINGMigut.F01094.1.p1e-179(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-122SCARECROW-like 8