PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa011034 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | GRAS | ||||||||||||
Protein Properties | Length: 613aa MW: 67805.1 Da PI: 6.9643 | ||||||||||||
Description | GRAS family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 322.8 | 6.9e-99 | 239 | 612 | 5 | 373 |
GRAS 5 LlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIle 104 + ++Aea+++g+ e a +l++r+++ ++ g+p qRl ++++ AL++r++ +++++ ++s+++e +e++ +++l+++ sP++k+++++aN+ Il+ Lsa011034 239 ISDAAEAITDGKSEIAMELITRINQFSNALGTPEQRLGFHMASALRSRVSV--NSTAE-EQSSPATELYRKEHILSTQLLYDKSPCFKIAFMAANNVILQ 335 5689*********************************************98..33332.233333334499***************************** PP GRAS 105 avege....ervHiiDfdisqGlQWpaLlqaLa.sRp..eg.ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 a+ g+ +r+H++Dfd+++GlQ++ Ll+++a +R+ + p sl++T++++ +g +e+l+ +g+ L+++ ++lgv f +nvl +l+dl+ + L + Lsa011034 336 ALLGSgrpeRRIHVVDFDVGHGLQYVYLLHEIAaARKidGViPISLKLTTFKDFGNGGSERLKLVGDGLRSLSNKLGVLFYYNVL-DFKLSDLNKQGLTI 434 **99888889**********************977877533366*********9999**************************95.669*********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 +++E+laVn++++l +l+desv++e+ rdevL+ vk+lsP vv+vveqe++ n++sF +r+ + ++yy+++++slea++pr++ er+k+E+ l+r+i n Lsa011034 435 ENEEVLAVNFAFKLSKLPDESVTTENLRDEVLRRVKDLSPAVVTVVEQELNANTASFTARVNDLFSYYTSFLNSLEATIPRTNPERVKIEEG-LSRRIFN 533 ********************************************************************************************.******* PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaW 373 vaceg++r+er+e ++kWr+rl++aGF + p+s+ +a++ k+ l+ + g++v+e+sg + +gW++rpL++vSaW Lsa011034 534 SVACEGRDRVERCEVFGKWRARLRMAGFDSKPVSQLTAESLKSKLNSWTrgNLGFTVKEDSGGISFGWMGRPLTVVSAW 612 *********************************************998865678************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 46.416 | 209 | 591 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.4E-96 | 239 | 612 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 613 aa Download sequence Send to blast |
MSSGFSGGFP DFFNANGGGV SNVSGRSMSM MNVNRSNYNQ QVNYRSPLAG ILSDSLSPVG 60 GSRSDFDGKR SLAEFQQQHQ LRQQAAVYMR NVKPRAYNQQ TDFLSSPEVS SVSSISSSSV 120 SRYGGQIPQQ LRPNFNGVMS NYQINDYSPA KQLPKNQEME TKMLNRLQEL EKELLLDDDD 180 GEHDAVSVIT DTEWSETIQK LLNPLQAQNP DNTVAPSPTT SSTSSSASSS ATVSPKQFIS 240 DAAEAITDGK SEIAMELITR INQFSNALGT PEQRLGFHMA SALRSRVSVN STAEEQSSPA 300 TELYRKEHIL STQLLYDKSP CFKIAFMAAN NVILQALLGS GRPERRIHVV DFDVGHGLQY 360 VYLLHEIAAA RKIDGVIPIS LKLTTFKDFG NGGSERLKLV GDGLRSLSNK LGVLFYYNVL 420 DFKLSDLNKQ GLTIENEEVL AVNFAFKLSK LPDESVTTEN LRDEVLRRVK DLSPAVVTVV 480 EQELNANTAS FTARVNDLFS YYTSFLNSLE ATIPRTNPER VKIEEGLSRR IFNSVACEGR 540 DRVERCEVFG KWRARLRMAG FDSKPVSQLT AESLKSKLNS WTRGNLGFTV KEDSGGISFG 600 WMGRPLTVVS AWH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-41 | 269 | 613 | 37 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023740396.1 | 0.0 | scarecrow-like protein 8 | ||||
TrEMBL | A0A2J6K112 | 0.0 | A0A2J6K112_LACSA; Uncharacterized protein | ||||
STRING | Migut.F01094.1.p | 1e-179 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 1e-122 | SCARECROW-like 8 |