PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa010988

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bHLH

Protein Properties

Length: 534aa MW: 58886.7 Da PI: 6.0817

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-31961	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.9	8.8e-09	371	418	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Lsa010988 371 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 418 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.02E-11	365	422	No hit	No description
SuperFamily	SSF47459	5.37E-17	365	436	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.663	367	417	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-17	367	437	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.3E-6	371	418	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	373	423	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence Send to blast
MEKDSFFSTE GNGIPHAWNS VFGMEIESQV SEMNCSSEQI PNCFFNRNWD NSMDQSDPFE 60 SALSSIVSSP VNSHPGIPIP SCGGENVVLR ELIGRLGSIC NSGEISPQSC IQGNNSANTS 120 CYNTPLNSPP KLNLSIMDHH QIQGNLPIPR NHQLPLAPFP ADPGFVERAA RFSCFGGKNF 180 GVKESEFPHM VESGKLSRVS SNQSFKTTGS QFVGIQEEGT GTPIPASDKK FSRLSMSLTS 240 ENKELDNSME ESSLSEQIPG GETGIKGQHT SSNGRKRKAI PKGKGKETQF SAQSTKDTTT 300 VVEQEKEESD AKRSRSDEEG NATEKEKEKE KEKVEGNGNG NQKQTKETAK LPEPPKDYIH 360 VRARRGQATD SHSLAERVRR EKISERMKFL QDLVPGCNKV TGKAVMLDEI INYVQSLQRQ 420 VEFLSMKLAT VNPRTDMNME ALLSKDTFQR ASMSNVMNHI DASVQPFYGM IPDGQEHPLM 480 AMMHRNSNMK SDGFGEANAF WENDLQSVVQ MGFGQNQAQS FHGTMGGGQM KVEL

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence Send to blast

MEKDSFFSTE GNGIPHAWNS VFGMEIESQV SEMNCSSEQI PNCFFNRNWD NSMDQSDPFE  60
SALSSIVSSP VNSHPGIPIP SCGGENVVLR ELIGRLGSIC NSGEISPQSC IQGNNSANTS  120
CYNTPLNSPP KLNLSIMDHH QIQGNLPIPR NHQLPLAPFP ADPGFVERAA RFSCFGGKNF  180
GVKESEFPHM VESGKLSRVS SNQSFKTTGS QFVGIQEEGT GTPIPASDKK FSRLSMSLTS  240
ENKELDNSME ESSLSEQIPG GETGIKGQHT SSNGRKRKAI PKGKGKETQF SAQSTKDTTT  300
VVEQEKEESD AKRSRSDEEG NATEKEKEKE KEKVEGNGNG NQKQTKETAK LPEPPKDYIH  360
VRARRGQATD SHSLAERVRR EKISERMKFL QDLVPGCNKV TGKAVMLDEI INYVQSLQRQ  420
VEFLSMKLAT VNPRTDMNME ALLSKDTFQR ASMSNVMNHI DASVQPFYGM IPDGQEHPLM  480
AMMHRNSNMK SDGFGEANAF WENDLQSVVQ MGFGQNQAQS FHGTMGGGQM KVEL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023748688.1	0.0	transcription factor bHLH62-like
TrEMBL	A0A2J6JI34	0.0	A0A2J6JI34_LACSA; Uncharacterized protein
STRING	VIT_05s0029g00390.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-89	bHLH family protein