PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa010913
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WRKY
Protein Properties Length: 240aa    MW: 27882.3 Da    PI: 6.8777
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-18070PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.14.2e-29123181259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +Dgy+WrKYGqK+ +++++pr+YY+C++a +Cpvkkkv+rs +d+ +++ +Y geHnhe
  Lsa010913 123 KDGYQWRKYGQKVTRDNPCPRAYYKCSFApSCPVKKKVQRSVDDEGLLVAIYDGEHNHE 181
                8***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-28117182IPR003657WRKY domain
PROSITE profilePS5081124.662117183IPR003657WRKY domain
SuperFamilySSF1182901.05E-24119181IPR003657WRKY domain
SMARTSM007744.3E-32122182IPR003657WRKY domain
PfamPF031061.2E-23123181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDETFLGIDL NVSPYYKTDD TPQMNDDMPE ELNQMRLKNK KLREMITVVL ENSNSLQNHV  60
NKLMQEHDLV ASNTNKRKFS ECDDRNSFES RKSLHQESLK SRNDGVTKVY RRTDPSDKSM  120
IIKDGYQWRK YGQKVTRDNP CPRAYYKCSF APSCPVKKKV QRSVDDEGLL VAIYDGEHNH  180
ENVESEHKLA SYERFKSPKE VGSFDAIFVE QMANSLRKNS DFIEELAVAI SSKILQHDVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-191211811372WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023759709.10.0probable WRKY transcription factor 60 isoform X1
TrEMBLA0A2J6LMT41e-177A0A2J6LMT4_LACSA; Uncharacterized protein