PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||||||
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TF ID | Lsa010658 | ||||||||||||||||
Organism | |||||||||||||||||
Taxonomic ID | |||||||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | ARF | ||||||||||||||||
Protein Properties | Length: 532aa MW: 60335.9 Da PI: 6.9018 | ||||||||||||||||
Description | ARF family protein | ||||||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78.7 | 5.9e-25 | 110 | 210 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+kvlt sd++++g +++ +k+a+e+ +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv a++L +gD++vF + +++el+v+ Lsa010658 110 FCKVLTASDTSTHGGFSVLRKHANEClpaldMSQPTPTQELVAKDLHGTEWRFKHIFRGQPRRHLLTTGWSTFVTAKRLVAGDSFVFL--RGENGELRVG 207 99****************************977777888*************************************************..4499999**9 PP EE- CS B3 96 vfr 98 v r Lsa010658 208 VKR 210 976 PP | |||||||
2 | Auxin_resp | 99.3 | 5.4e-33 | 236 | 315 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st++ F v+Y+Pr+ s+F++ ++k+ +++++k+s+GmRf m+fe eds+err++G+++gv+dl+ +W+ S+WrsLk Lsa010658 236 ASHAVSTQTRFVVYYKPRT--SQFIIGLNKYIESVNNKFSIGMRFNMRFECEDSPERRFTGMITGVEDLSH-QWECSQWRSLK 315 789***************6..9**********************************************766.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.22E-39 | 96 | 239 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-39 | 104 | 225 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.79E-21 | 108 | 210 | No hit | No description |
Pfam | PF02362 | 4.5E-23 | 110 | 210 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.3E-23 | 110 | 212 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.337 | 110 | 212 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-30 | 236 | 315 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.3E-6 | 413 | 455 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 23.518 | 419 | 500 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.16E-12 | 420 | 495 | No hit | No description |
Pfam | PF02309 | 2.5E-6 | 462 | 500 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 532 aa Download sequence Send to blast |
MEDLLYKELW KACAGPLVDV PRDGERVFYF PQGHMEQLEE SNNQEIDQSI PHFNLKSKIL 60 CRVVYTQLLA EQDTDEVYAQ ITLLPEADQS DPTSLDKCID DPPKASIHSF CKVLTASDTS 120 THGGFSVLRK HANECLPALD MSQPTPTQEL VAKDLHGTEW RFKHIFRGQP RRHLLTTGWS 180 TFVTAKRLVA GDSFVFLRGE NGELRVGVKR VGQQHNSMPS SVISSRSMRL GVLATASHAV 240 STQTRFVVYY KPRTSQFIIG LNKYIESVNN KFSIGMRFNM RFECEDSPER RFTGMITGVE 300 DLSHQWECSQ WRSLKVQWVE PTSIVRPDRV SPWEIETETH ATTFIPTSSG QPVGVGVGPN 360 KTKRPRPPVN LPLPNVDLLK KSENVSTCRL FGFDLKIVVP SVERHEPDQK DCKQTGLTRT 420 RTKVQMQGVA VGRAVDLTML KGYNHLIDEL EEMFEIKGKL RSKSQWEIVF TDDEGDMMLM 480 GDDPWQEFCK MVKRILICSC QDVKKMSCGS KLQLSSYLDN ELSGFSLEAA EH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-167 | 1 | 336 | 15 | 353 | Auxin response factor 1 |
4ldw_A | 1e-167 | 1 | 336 | 15 | 353 | Auxin response factor 1 |
4ldw_B | 1e-167 | 1 | 336 | 15 | 353 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 362 | 366 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023764748.1 | 0.0 | auxin response factor 18-like isoform X1 | ||||
Swissprot | Q9C5W9 | 0.0 | ARFR_ARATH; Auxin response factor 18 | ||||
Swissprot | Q9ZPY6 | 0.0 | ARFK_ARATH; Auxin response factor 11 | ||||
TrEMBL | A0A2J6MFM8 | 0.0 | A0A2J6MFM8_LACSA; Auxin response factor | ||||
STRING | POPTR_0001s10900.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61830.1 | 0.0 | auxin response factor 18 |
Publications ? help Back to Top | |||
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