PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa010657

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

HB-other

Protein Properties

Length: 1507aa MW: 167213 Da PI: 6.6695

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58697234	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-56284	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51.6	1.6e-16	29	83	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t+ qle+Le+ ++ + yp ++ r++L+ +lgLt+rq ++WF+ rR k++k Lsa010657 29 KRKMKTAFQLEILEKTYAVEAYPAEALRADLSVQLGLTDRQLQMWFCHRRLKDRK 83 89999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-16	10	83	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.84E-15	14	83	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.516	24	84	IPR001356	Homeobox domain
SMART	SM00389	4.9E-14	26	88	IPR001356	Homeobox domain
CDD	cd00086	9.17E-12	27	84	No hit	No description
Pfam	PF00046	4.5E-14	29	83	IPR001356	Homeobox domain
SMART	SM00571	1.4E-21	562	621	IPR018501	DDT domain
PROSITE profile	PS50827	17.592	562	621	IPR018501	DDT domain
Pfam	PF02791	3.2E-18	563	618	IPR018501	DDT domain
Pfam	PF05066	2.6E-15	743	811	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	2.2E-8	920	963	IPR028942	WHIM1 domain
Pfam	PF15613	2.1E-11	1068	1140	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1507 aa Download sequence Send to blast
MDGGASGHGG GGSEGENKNS AEGGEPKVKR KMKTAFQLEI LEKTYAVEAY PAEALRADLS 60 VQLGLTDRQL QMWFCHRRLK DRKTPPVKRP KKEISSSGGG GGDDVMVSGE GLPNEHGGSG 120 GSGSGSSPFG HTGRPVPAMV ATASGRVPAV VAAPIDMPPV KRYYEPPHAV SEVRAIAFVE 180 AQLGERLRED GPILGMEFDP LPPGAFGAPI VQQKSAVRPY EAKLYEHPDA KPVKGASKAL 240 HEYQFLPEQP SVRSDSYERA MPPQYYSSPN DMASSRTPVT TTTTTTRSFT HGNDQMASGY 300 VIPPPQVRSG SGHLLPPAAG EFDGGGGGGR KSLTVSVGVD TNLGAHPITG IENPFCTPIE 360 KRVTHEEDIA RIERKRKSEE ARIAKEVEAH EKRIKKELEK QDMMRRKREE QVRKEMERQD 420 RERRKEEERL LREKQREEER YQREQRREME RRVKFLQKES IRAEKLRLKE DMRKEKEAAR 480 LKAANDRAAA RRIAKESLEL IDDERLELME IAAATKGLPS MLALDSDTLE NLDSLRDMLP 540 EFPPKSVPLK KPFKVQPWTD SEENIGNLLM VWKFVITFAD VLGLWPFTLD EFVQALHDHD 600 PRLLGEIHVA LLKSIVKDIE DVARAPSSSL GANQTSAPNP GGGHQHVVEG AFAWGFDICS 660 WQRHLNPLTW PEILRQFALA AGYGPKLKKR NVDQPHPHEE NEGVDGGDII SNLRSGVAAE 720 KALAIMQERG FSNRRSRHRL TPGTVKYAAF HVLSLEGSHG LSILDVAEKI QKSGLRDLTT 780 SKTPEASIAA ALSRDTKLFE RTAPSTYCLR SPYRKDPADG EAIINAAREK IHIFKNGYFD 840 GEEAFDAERD DPEKDDDSES DVAEDPEIDD IGIDGIGIGI GIGNSGVKSE TLEDTKVGTS 900 IDKVSGTHEG EDTVVDESIS GEPWVQGLME GEYSDLSVEE RLNALVALIA VANEGNSIRV 960 VLEERLEAAM ALKKQMWAEA QVDKRKMKED FMIKIQYPST DNQTELASSN NHHQETSGDH 1020 PTTAERLPEY SIGPDSFQLQ QPAYAVEKSR SQLKSFIGHK AEEMYVYRSL PLGHDRRRNR 1080 YWRFITSASQ NDPGSGRIFV ELRDARWRLI DTEEGFNSLL ASLDVRGNRE AHLHSMLQRI 1140 ESDFKEAINK KRVRVGVRVG VDSSSPISTL SITNTNISEF SSSFSIELGQ SGKEITNALK 1200 RYQEFEKWMW GECLNLRAMK FGNARCQHVV GICDNCRDLS FFEGSNRCFS CGKICDIFIG 1260 SNFAFSKCIS EFKEKLKGNS GFYFLNRESG RPVRFRLVKA QLALIEASIP VEALRPSWTE 1320 ECRKSWCVKL VKAVNPEALL EALTLLESAI KRDFLAMDFE TTDELLGSNN SATLCGTSDF 1380 SMVSVLPWLP ETTAGVALRL MELDTSIHYL LTQKEDAEKD KGATSFLTFP LKYAVTKNGE 1440 EGDNSEQLYG SGNIQDPWAD PGTSGRGRGR GRGRGRARGG RSQRTMGSRS RGKAADIRLG 1500 RGRGGGG

Sequence ? help Back to Top

Protein Sequence Length: 1507 aa Download sequence Send to blast

MDGGASGHGG GGSEGENKNS AEGGEPKVKR KMKTAFQLEI LEKTYAVEAY PAEALRADLS  60
VQLGLTDRQL QMWFCHRRLK DRKTPPVKRP KKEISSSGGG GGDDVMVSGE GLPNEHGGSG  120
GSGSGSSPFG HTGRPVPAMV ATASGRVPAV VAAPIDMPPV KRYYEPPHAV SEVRAIAFVE  180
AQLGERLRED GPILGMEFDP LPPGAFGAPI VQQKSAVRPY EAKLYEHPDA KPVKGASKAL  240
HEYQFLPEQP SVRSDSYERA MPPQYYSSPN DMASSRTPVT TTTTTTRSFT HGNDQMASGY  300
VIPPPQVRSG SGHLLPPAAG EFDGGGGGGR KSLTVSVGVD TNLGAHPITG IENPFCTPIE  360
KRVTHEEDIA RIERKRKSEE ARIAKEVEAH EKRIKKELEK QDMMRRKREE QVRKEMERQD  420
RERRKEEERL LREKQREEER YQREQRREME RRVKFLQKES IRAEKLRLKE DMRKEKEAAR  480
LKAANDRAAA RRIAKESLEL IDDERLELME IAAATKGLPS MLALDSDTLE NLDSLRDMLP  540
EFPPKSVPLK KPFKVQPWTD SEENIGNLLM VWKFVITFAD VLGLWPFTLD EFVQALHDHD  600
PRLLGEIHVA LLKSIVKDIE DVARAPSSSL GANQTSAPNP GGGHQHVVEG AFAWGFDICS  660
WQRHLNPLTW PEILRQFALA AGYGPKLKKR NVDQPHPHEE NEGVDGGDII SNLRSGVAAE  720
KALAIMQERG FSNRRSRHRL TPGTVKYAAF HVLSLEGSHG LSILDVAEKI QKSGLRDLTT  780
SKTPEASIAA ALSRDTKLFE RTAPSTYCLR SPYRKDPADG EAIINAAREK IHIFKNGYFD  840
GEEAFDAERD DPEKDDDSES DVAEDPEIDD IGIDGIGIGI GIGNSGVKSE TLEDTKVGTS  900
IDKVSGTHEG EDTVVDESIS GEPWVQGLME GEYSDLSVEE RLNALVALIA VANEGNSIRV  960
VLEERLEAAM ALKKQMWAEA QVDKRKMKED FMIKIQYPST DNQTELASSN NHHQETSGDH  1020
PTTAERLPEY SIGPDSFQLQ QPAYAVEKSR SQLKSFIGHK AEEMYVYRSL PLGHDRRRNR  1080
YWRFITSASQ NDPGSGRIFV ELRDARWRLI DTEEGFNSLL ASLDVRGNRE AHLHSMLQRI  1140
ESDFKEAINK KRVRVGVRVG VDSSSPISTL SITNTNISEF SSSFSIELGQ SGKEITNALK  1200
RYQEFEKWMW GECLNLRAMK FGNARCQHVV GICDNCRDLS FFEGSNRCFS CGKICDIFIG  1260
SNFAFSKCIS EFKEKLKGNS GFYFLNRESG RPVRFRLVKA QLALIEASIP VEALRPSWTE  1320
ECRKSWCVKL VKAVNPEALL EALTLLESAI KRDFLAMDFE TTDELLGSNN SATLCGTSDF  1380
SMVSVLPWLP ETTAGVALRL MELDTSIHYL LTQKEDAEKD KGATSFLTFP LKYAVTKNGE  1440
EGDNSEQLYG SGNIQDPWAD PGTSGRGRGR GRGRGRARGG RSQRTMGSRS RGKAADIRLG  1500
RGRGGGG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1467	1477	RGRGRGRGRAR
2	1469	1478	RGRGRGRARG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023758245.1	0.0	homeobox-DDT domain protein RLT2
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A2J6LQM4	0.0	A0A2J6LQM4_LACSA; Uncharacterized protein
STRING	XP_009773812.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator