PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa010637
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family YABBY
Protein Properties Length: 202aa    MW: 22249.4 Da    PI: 9.5935
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S32122273PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-19614PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY59.41.6e-182067451
      YABBY  4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnla 51
                 s +++Cyv+CnfCnt+lav +P + l+ +vtv+CGhC++l  ++++
  Lsa010637 20 APSDQHLCYVRCNFCNTLLAVGIPCKRLLDTVTVKCGHCSNLSFLTIR 67
               56778************************************9887776 PP
2YABBY103.25.2e-329616696165
      YABBY  96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWa.hfPk 165
                 ss++ s++++  +p++p v++PPek+ r Psaynrf+keeiqrikasnP+i hreafs+aaknWa h+P+
  Lsa010637  96 SSSSSSSTSNEPTSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKASNPQIPHREAFSTAAKNWAgHIPN 166
                34444578889999***************************************************978886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.6E-5023166IPR006780YABBY protein
SuperFamilySSF470952.62E-8107161IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.1E-5117161IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MNFEVQAERV ASMDPPVQTA PSDQHLCYVR CNFCNTLLAV GIPCKRLLDT VTVKCGHCSN  60
LSFLTIRPSP PDHLLQPPPL PPFQSAFSGD LKRGQSSSSS SSTSNEPTSP KAPFVVKPPE  120
KKHRLPSAYN RFMKEEIQRI KASNPQIPHR EAFSTAAKNW AGHIPNGSIS GSINTGFDLS  180
GLKSKVDFIS KLYDMTLKQL RD
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023731355.11e-134protein CRABS CLAW
SwissprotQ76EJ07e-62YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A2J6KL781e-133A0A2J6KL78_LACSA; Uncharacterized protein
STRINGXP_002512055.18e-72(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.14e-54YABBY family protein