PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa010605
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GRAS
Protein Properties Length: 485aa    MW: 54168.8 Da    PI: 4.9878
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58685958PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2301.1e-701744842326
       GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                v+ L+++Ae++++++ +laq +++rl+++ ++p+g+++qR+a+yf+eAL++ l++       +  ++++s+++ ++++ a+k+fs+vsPi+ fs +taNq
  Lsa010605 174 VDELIRIAECFETRSIQLAQVIMTRLNQRlRAPTGKALQRAAFYFKEALQSLLTG------PTRMTQSSSSSEIVQSIEAYKTFSNVSPIPMFSDFTANQ 267
                678*************************99*************************......3334455555679************************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                a+leav+g+  vH+iDfdi+ G++W+++++++a+++      +p +RiT++ ++e   + e + ++++L +fA+ l+++f+++++  +++e l+++++++
  Lsa010605 268 AMLEAVDGAMIVHVIDFDIGLGGHWASFMKEIAEKAearkVHSPAVRITAIIPEE--YEMESKLIRDNLWQFARGLKLRFDIDFVSFRTFEYLSFKAIKF 365
                *********************************9885544669**********66..99999**********************9999************ PP

       GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsl.eaklpres..eerikvErellg 291
                 +gE++aV l+  +++              +++ ++++sP+v+v+v+ e  +  +++ F + +++ le+ys+l++sl +a+++     ++ +k+E ++l 
  Lsa010605 366 MEGEKTAVLLSSTVFHRI---------GAGFINDLRRVSPHVIVFVDGEglMGSETSFFRQTVIDGLEFYSTLLESLeAANIGGGGgsDWIRKIEMFVLL 456
                *********999887776.........247*******************54455777999*****************77777654333999********* PP

       GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkp 326
                ++i+ +v ++g++       + +Wre++++aG++p
  Lsa010605 457 PKITAAVEASGRH-------VPSWREAFSRAGMRP 484
                ***********98.......89**********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.35147485IPR005202Transcription factor GRAS
PfamPF035143.8E-68174484IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
XKFYVPALRL RNEIALPSSQ NNLNSSNVKQ QVAGGGIGSN RYEPKSVLDV RRSPPSPITG  60
KASEFNSVDH NIVVFSSEEE QLPLDNIEHG MIHQFEEWDS LMKELGLHDD STKSAYPLDL  120
PELPPIHTES AAPATALFFH SDFENLNPNL NALDFMSQDD DDNSNNNGNG FDFVDELIRI  180
AECFETRSIQ LAQVIMTRLN QRLRAPTGKA LQRAAFYFKE ALQSLLTGPT RMTQSSSSSE  240
IVQSIEAYKT FSNVSPIPMF SDFTANQAML EAVDGAMIVH VIDFDIGLGG HWASFMKEIA  300
EKAEARKVHS PAVRITAIIP EEYEMESKLI RDNLWQFARG LKLRFDIDFV SFRTFEYLSF  360
KAIKFMEGEK TAVLLSSTVF HRIGAGFIND LRRVSPHVIV FVDGEGLMGS ETSFFRQTVI  420
DGLEFYSTLL ESLEAANIGG GGGSDWIRKI EMFVLLPKIT AAVEASGRHV PSWREAFSRA  480
GMRPX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-1517948324329Protein SCARECROW
5b3h_D8e-1517948324329Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023735563.10.0scarecrow-like protein 15
SwissprotO232101e-108SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A2J6MCI20.0A0A2J6MCI2_LACSA; Uncharacterized protein
STRINGXP_009803270.11e-176(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]