PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa010521 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | ZF-HD | ||||||||
Protein Properties | Length: 250aa MW: 27439.4 Da PI: 7.9554 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.7 | 2.4e-32 | 43 | 99 | 3 | 60 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++rY+eClkNhA+ +GghavDGCgEfm++ g+egt +alkCaAC+CHRnFHR+e e + Lsa010521 43 GFRYRECLKNHAVGIGGHAVDGCGEFMAA-GDEGTLDALKCAACNCHRNFHRKEIEGQ 99 579*************************9.999*********************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.1E-29 | 44 | 96 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.5E-29 | 45 | 96 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.26 | 46 | 95 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-22 | 48 | 97 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 5.61E-21 | 174 | 248 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.0E-32 | 181 | 249 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.5E-23 | 187 | 243 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MEFDEHEEQE EEVGIQLPPG NYDGVGNSGT GREVRKSGGG GGGFRYRECL KNHAVGIGGH 60 AVDGCGEFMA AGDEGTLDAL KCAACNCHRN FHRKEIEGQQ RQHQQLQQQH QTALQHQYMT 120 PPPYYHPHHR PTGYLHMTPA PSSHHQRPLA LPSTSREDLE EISNPSSSGG GGGGGLGGGV 180 GGGSGSRKRF RTKFTQDQKD RMLAFSETLG WRIQKQDEAA VQQFCAETGV KRHVLKVWMH 240 NNKHTIGKKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 6e-27 | 188 | 245 | 18 | 75 | ZF-HD homeobox family protein |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023750457.1 | 0.0 | zinc-finger homeodomain protein 1-like | ||||
Swissprot | A2Z259 | 9e-76 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A2J6M7I0 | 0.0 | A0A2J6M7I0_LACSA; Uncharacterized protein | ||||
STRING | XP_010266504.1 | 5e-94 | (Nelumbo nucifera) |