PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa010406
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bZIP
Protein Properties Length: 353aa    MW: 37770.6 Da    PI: 6.8924
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58684950PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-51766PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_165.11.2e-20269331163
                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L+ eN +L+ e+++++  +++l +e+
  Lsa010406 269 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKDENASLRAEVKRIRTDYDQLLAEN 331
                89*********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077775.8E-27890IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.7E-31129244No hitNo description
Gene3DG3DSA:1.20.5.1702.3E-16264327No hitNo description
SMARTSM003382.5E-21269333IPR004827Basic-leucine zipper domain
PfamPF001703.9E-19269331IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.886271334IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.38E-11272327No hitNo description
CDDcd147023.55E-22274325No hitNo description
PROSITE patternPS000360276291IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDKPVKEAKE STKETPTSQE QSSGNPMGAV PDWTGFQAYS PMPPHGYLAS SPQAPPYMWG  60
VQHLMPPYGA PHPYLAMYPH GGMYTHPSMP PGSYPYPYAM PSPNGVAEAS GNTTPGSMEV  120
NGKSSEGKEK LPIKRSKGSL GSLNMITGKN NESSKAGASG NGSYPKSGES GSEGSSEGSD  180
ANSENNSQMK SGSRQDSMEG EESQNGNNMH GCQNGGPNHS MAIVPISGPG SVVGGPTTGT  240
NLNIVSGGML AAAAGSRETI QPQIWLQDER ELKRQRRKQS NRESARRSRL RKQAECDELA  300
QRAEALKDEN ASLRAEVKRI RTDYDQLLAE NASLKERLGE TPKKNNEEGE TQT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285291RRSRLRK
2285292RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023750159.10.0bZIP transcription factor 68-like isoform X1
SwissprotQ501B21e-123BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A2J6M8630.0A0A2J6M863_LACSA; Uncharacterized protein
STRINGXP_008238155.11e-169(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.12e-96basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]