PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa010313
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GRAS
Protein Properties Length: 499aa    MW: 56056.6 Da    PI: 4.8893
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-5294PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS301.22.6e-921404982374
       GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                ++ L++ A+++++++++laq +Larl++l +sp+g+++qR+a+y++eA++  l++      ++ + ++ ++++ +++++a+k+fs vsPi+ fs +taNq
  Lsa010313 140 RDELIRLADCFETQSFQLAQVILARLNQLlRSPTGKAFQRAAFYIKEAIQCLLTG------STRSFQTCNSYEIVQVIKAYKTFSIVSPIPMFSSFTANQ 233
                678*************************99*************************......667777888888*************************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                aIl+av+g+  vH+iDfdi+ G+QW+++l+a+a+++     ++p +RiT+v+++e   + e + ++++L++f + l+v+f+++++  +++e l+++++++
  Lsa010313 234 AILDAVDGAMIVHVIDFDIGLGGQWASFLKAIAEKAearkVNSPVVRITAVVPEE--YELESRLIRDNLHQFSSDLKVRFDIDFVSIRTFEYLSFKAIKF 331
                *********************************9885555679**********66..99999***********************99************* PP

       GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsl.eaklpres...eerikvErellg 291
                 +gE++aV l+  ++r              +++ ++++sP+vvv  + e++  +++ F + +++ le y+++++sl +a+++      ++ +++E ++l 
  Lsa010313 332 VTGEKTAVLLSPTIFRRI---------GAGFINDLRQVSPHVVVYLDGELNGsGASFFRQTVINGLELYTTILESLeAANVGGGVtggDWIRNIEMFVLL 422
                ************999998.........347*********************978889999****************778887766777999********* PP

       GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                ++i   v  +g++       +  Wre++++aG++pv ls++a  qa++llr+v+ +g++v +++g+lvl+W+drpLv++SaW+
  Lsa010313 423 PKIITTVEDAGRH-------VTPWREAFGRAGMRPVGLSQFADFQAECLLRRVQIRGFHVAKQQGELVLCWHDRPLVATSAWT 498
                ********99998.......89************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.617113478IPR005202Transcription factor GRAS
PfamPF035149.0E-90140498IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MKFPFVSSQN NLSVDNIGGN RYEPKSVLDI RRSPPSPLTG NSSDFNSIGY YNTVLLSSEE  60
QLPVDNFENG MINHREEWDS DSLMRELGLY DDSTKSAYPL DLPELPPFFQ SDFESLNPNS  120
NQNPFDLMSQ RDDGSEFDFR DELIRLADCF ETQSFQLAQV ILARLNQLLR SPTGKAFQRA  180
AFYIKEAIQC LLTGSTRSFQ TCNSYEIVQV IKAYKTFSIV SPIPMFSSFT ANQAILDAVD  240
GAMIVHVIDF DIGLGGQWAS FLKAIAEKAE ARKVNSPVVR ITAVVPEEYE LESRLIRDNL  300
HQFSSDLKVR FDIDFVSIRT FEYLSFKAIK FVTGEKTAVL LSPTIFRRIG AGFINDLRQV  360
SPHVVVYLDG ELNGSGASFF RQTVINGLEL YTTILESLEA ANVGGGVTGG DWIRNIEMFV  420
LLPKIITTVE DAGRHVTPWR EAFGRAGMRP VGLSQFADFQ AECLLRRVQI RGFHVAKQQG  480
ELVLCWHDRP LVATSAWTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-201264986379Protein SCARECROW
5b3h_A6e-201264985378Protein SCARECROW
5b3h_D6e-201264985378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023753478.10.0scarecrow-like protein 15
SwissprotO232101e-138SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A2J6M1490.0A0A2J6M149_LACSA; Uncharacterized protein
STRINGXP_009803270.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-140GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]