PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa010286

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

HD-ZIP

Protein Properties

Length: 201aa MW: 23579.4 Da PI: 8.6339

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58672173	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.6	2.1e-18	40	92	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++t++q++ Le++F +++++ +++ +L+++lg++ rq+ +W+qN+Ra++k+ Lsa010286 40 KRLTEDQVRLLESYFDSSKKLEPDRKHQLSRQLGIPPRQIAIWYQNKRARWKN 92 5789***********************************************95 PP
2	HD-ZIP_I/II	107.6	9e-35	39	129	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +rl+++qv+lLE+ F++++kLep+rK++l+r+Lg+ prq+a+W+qn+RAR+k++ lE+dy++L+ +++a + e+++L+kev+ Lr+el++ Lsa010286 39 TKRLTEDQVRLLESYFDSSKKLEPDRKHQLSRQLGIPPRQIAIWYQNKRARWKNQSLEHDYTMLQLQLEASVLETKHLQKEVDYLRTELNK 129 58************************************************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.807	33	93	IPR001356	Homeobox domain
SMART	SM00389	7.0E-16	33	97	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.77E-18	34	101	IPR009057	Homeodomain-like
CDD	cd00086	5.54E-14	36	94	No hit	No description
Pfam	PF00046	1.3E-15	40	92	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.9E-19	41	100	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	68	91	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
TESKTRPQSP PTPHLLSIMN HSTYHNQKPN PNKPNKHTTK RLTEDQVRLL ESYFDSSKKL 60 EPDRKHQLSR QLGIPPRQIA IWYQNKRARW KNQSLEHDYT MLQLQLEASV LETKHLQKEV 120 DYLRTELNKV QSEQARHNRY YNNDYQPLMD SSFSRCGDDV GSSSKSLEDD TEHLCGFGKQ 180 VFDAAEMYTA ARMMGMDILH F

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023771289.1	1e-137	homeobox-leucine zipper protein ATHB-52-like
TrEMBL	A0A2J6KX38	1e-136	A0A2J6KX38_LACSA; Uncharacterized protein
STRING	XP_009791458.1	1e-38	(Nicotiana sylvestris)
STRING	Migut.M00776.1.p	2e-38	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	3e-30	homeobox protein 52