PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa010128
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 273aa    MW: 30461.1 Da    PI: 9.183
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-13445PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.8e-1993143256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr++  +g+WvAeIr p++   r r++lg++ tae+Aa a+++a+ kl+ge
  Lsa010128  93 LYRGVRQRQ-WGKWVAEIRLPRN---RMRVWLGTYETAEMAAYAYDRAAYKLRGE 143
                59****999.**********965...59*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.04E-2292152No hitNo description
SMARTSM003801.3E-3593156IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-3193151IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2293150IPR016177DNA-binding domain
PROSITE profilePS5103223.31493150IPR001471AP2/ERF domain
PfamPF008475.3E-1394143IPR001471AP2/ERF domain
PRINTSPR003673.5E-1094105IPR001471AP2/ERF domain
PRINTSPR003673.5E-10116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MQENTRNPFA VDLISDSVRS SLSNLILTGG NTSTFDSVFS HGSSSSSWVE GATIGSSMYL  60
KQRDLILKFT DEFETKSPIG FSHQASNLYK KKLYRGVRQR QWGKWVAEIR LPRNRMRVWL  120
GTYETAEMAA YAYDRAAYKL RGEYARLNFP NVKESTSLGL IGDERKLNAL RNAVDNKLEA  180
ICRKVRREKA QKREERKKVT VVGNSGGGDE SFSGSDMGSS SVSEDGFLKG ENSPSGSTFS  240
GELTMAEEVE IGGWSLARMP SYDLDSIWEI LAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2090150263ATERF1
3gcc_A3e-2090150263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023770183.10.0ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W22e-55ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A2J6KZW80.0A0A2J6KZW8_LACSA; Uncharacterized protein
STRINGXP_006439361.11e-75(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.12e-40ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]