PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa010003

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

GRAS

Protein Properties

Length: 615aa MW: 67053.1 Da PI: 5.8489

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58692592	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	418.4	6.1e-128	255	614	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 +lLl+cAeavs++++e a+++L ++sel++p+g++ qR+aayf eA++arl++s+ ++y +lpps + ++ ++ ++a+++f+ +sP++kfsh+taNqa Lsa010003 255 LTLLLQCAEAVSADKFEDANKMLLEISELSTPYGTSAQRVAAYFSEAMSARLMSSCLGIYTTLPPSIAVHQGLKKMTSAFQVFNGISPFVKFSHFTANQA 354 579***************************************************************9999************************ PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201 I ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g+ s ++le+tg+rL++fA++lg+pfef++ va+++ +l++e+L+v+++Ea Lsa010003 355 IQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGN----SLDALEATGKRLSDFADKLGLPFEFSA-VADKVGNLNPERLKVSKREA 449 ********************************************....9**********************.8*************** PP GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301 +aV++ h+l+d ++s ++ +L+++++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl +++++eseer++vE++ll++ei+nv+a Lsa010003 450 VAVHWLQ--HSLYDVTGSDTN----TLWFLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSKEIRNVLAIG 542 **9..999999999999....******************.899********************************************* PP GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 g +r ++ ++++Wre+le++GFk ++l +aa+qa lll +++s+gy++ e++g+l lgWkd L+++SaWr Lsa010003 543 GPSRSGEQ-KFNNWREKLEQCGFKGISLAGNAAAQATLLLGMFPSNGYTLVEDKGTLKLGWKDLCLLTASAWR 614 977665.5**************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.608	228	594	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.1E-125	255	614	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 615 aa Download sequence Send to blast
XAPPPSSNNT NTAGMSFLTG GGGANNNNIM PADDSISATA WIDSIIKDLI HSSTDVSIPH 60 LIHNVREIIH PCNPNLATLL EYRLRSLTDP PPNLVDQQSA HEPADNFNAR VMMMRGKEAQ 120 ASSSTLRQQQ QQQPRSTIQS TISASGLESM FPLPLPDSQQ QLNNQSHLDW GGVNNSGNDD 180 YNAGGAPPPP PGPALMSSSG NQEQQQQDSP PSQPSPQADQ NAVAASAQAA AMVLREKKRE 240 EMRQQKRDEQ GLHLLTLLLQ CAEAVSADKF EDANKMLLEI SELSTPYGTS AQRVAAYFSE 300 AMSARLMSSC LGIYTTLPPS IAVHQGLKKM TSAFQVFNGI SPFVKFSHFT ANQAIQEAFE 360 REDRVHIIDL DIMQGLQWPG LFHILASRPG GPPFVRLTGL GNSLDALEAT GKRLSDFADK 420 LGLPFEFSAV ADKVGNLNPE RLKVSKREAV AVHWLQHSLY DVTGSDTNTL WFLQRLAPKV 480 VTVVEQDLSH AGSFLGRFVE AIHYYSALFD SLGSSYGEES EERHVVEQQL LSKEIRNVLA 540 IGGPSRSGEQ KFNNWREKLE QCGFKGISLA GNAAAQATLL LGMFPSNGYT LVEDKGTLKL 600 GWKDLCLLTA SAWRP

Sequence ? help Back to Top

Protein Sequence Length: 615 aa Download sequence Send to blast

XAPPPSSNNT NTAGMSFLTG GGGANNNNIM PADDSISATA WIDSIIKDLI HSSTDVSIPH  60
LIHNVREIIH PCNPNLATLL EYRLRSLTDP PPNLVDQQSA HEPADNFNAR VMMMRGKEAQ  120
ASSSTLRQQQ QQQPRSTIQS TISASGLESM FPLPLPDSQQ QLNNQSHLDW GGVNNSGNDD  180
YNAGGAPPPP PGPALMSSSG NQEQQQQDSP PSQPSPQADQ NAVAASAQAA AMVLREKKRE  240
EMRQQKRDEQ GLHLLTLLLQ CAEAVSADKF EDANKMLLEI SELSTPYGTS AQRVAAYFSE  300
AMSARLMSSC LGIYTTLPPS IAVHQGLKKM TSAFQVFNGI SPFVKFSHFT ANQAIQEAFE  360
REDRVHIIDL DIMQGLQWPG LFHILASRPG GPPFVRLTGL GNSLDALEAT GKRLSDFADK  420
LGLPFEFSAV ADKVGNLNPE RLKVSKREAV AVHWLQHSLY DVTGSDTNTL WFLQRLAPKV  480
VTVVEQDLSH AGSFLGRFVE AIHYYSALFD SLGSSYGEES EERHVVEQQL LSKEIRNVLA  540
IGGPSRSGEQ KFNNWREKLE QCGFKGISLA GNAAAQATLL LGMFPSNGYT LVEDKGTLKL  600
GWKDLCLLTA SAWRP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	0.0	238	615	3	380	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269\|PubMed:16339910}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023743555.1	0.0	protein SCARECROW
Swissprot	Q2Z2E9	0.0	SCR_IPONI; Protein SCARECROW
TrEMBL	A0A2J6JU63	0.0	A0A2J6JU63_LACSA; Uncharacterized protein
STRING	cassava4.1_001986m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54220.1	0.0	GRAS family protein