PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa009952 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | ZF-HD | ||||||||
Protein Properties | Length: 192aa MW: 22344.1 Da PI: 9.6712 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 20.8 | 8.9e-07 | 2 | 15 | 46 | 59 |
ZF-HD_dimer 46 CgCHRnFHRrevee 59 C+CHRnFHR+e e Lsa009952 2 CNCHRNFHRKEIEG 15 ***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.7E-19 | 105 | 178 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-29 | 111 | 178 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.5E-27 | 117 | 173 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
XCNCHRNFHR KEIEGEIHHH HHPVSCDYNY HSAPRIEVGN GRLQGHHHHR GILGRESYGY 60 NHNHAGVLVP SRAPLPLIMS YDMGIGSFPS ESDHELEDGG GFMNRHHPPL QPHQIVKKRF 120 RTKFTEEQKE KMLSFAEKVG WKIQKQEESV VQQFCQELGI KRRVLKVWMH NNKLNLAKKI 180 NPVPINPQNQ VN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-24 | 118 | 173 | 18 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023738137.1 | 1e-140 | zinc-finger homeodomain protein 3-like | ||||
Swissprot | O64722 | 2e-41 | ZHD3_ARATH; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | A0A2J6K5Z9 | 1e-139 | A0A2J6K5Z9_LACSA; Uncharacterized protein | ||||
STRING | cassava4.1_013112m | 1e-63 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 1e-41 | homeobox protein 21 |
Publications ? help Back to Top | |||
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