PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa009913
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28618.6 Da    PI: 9.0768
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58680643PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-42053PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81.1e-31959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Lsa009913  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
               79***********************************************96 PP
2K-box101.31.4e-33821739100
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                + e+++++ ++e+ +Lk+++e Lqr+qR+llGedL++L+ keL+qLe+qLe sl+kiRs+K++ +l+q+ elq+ke+ l e+nkaLrkklee
  Lsa009913  82 QPENESQYNYHEYLRLKARVEVLQRSQRNLLGEDLTPLNTKELEQLEHQLEMSLRKIRSTKTQCMLDQLAELQRKEQVLAETNKALRKKLEE 173
                678999***********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.515161IPR002100Transcription factor, MADS-box
CDDcd002654.23E-45278No hitNo description
SuperFamilySSF554551.29E-34290IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-33323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-333859IPR002100Transcription factor, MADS-box
PfamPF014861.8E-2881171IPR002487Transcription factor, K-box
PROSITE profilePS5129716.59887177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
SSMVKTLEKY HSCSYGSLKA TQPENESQYN YHEYLRLKAR VEVLQRSQRN LLGEDLTPLN  120
TKELEQLEHQ LEMSLRKIRS TKTQCMLDQL AELQRKEQVL AETNKALRKK LEENAQEFPV  180
RQMWEGGAQT IPYNPLPTHS DDFFQPLGLN STMHTSFSGL RYNPIGSDEM NVAGVNGNNP  240
NGLFPGWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A4e-269217122101Developmental protein SEPALLATA 3
4ox0_B4e-269217122101Developmental protein SEPALLATA 3
4ox0_C4e-269217122101Developmental protein SEPALLATA 3
4ox0_D4e-269217122101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023762114.10.0MADS-box protein EJ2-like
RefseqXP_023762116.10.0MADS-box protein EJ2-like
SwissprotQ7Y0401e-115EJ2_SOLLC; MADS-box protein EJ2
TrEMBLA0A2J6LHM80.0A0A2J6LHM8_LACSA; Uncharacterized protein
STRINGXP_010257958.11e-127(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.12e-95MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]