PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa009911
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GRAS
Protein Properties Length: 635aa    MW: 68912.6 Da    PI: 6.9947
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58693490PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-12211PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS330.72.7e-1012696343373
       GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
                +lL + A a+++g++  a ++L+rl++ ++  g+p qRl +y++ AL++rl++         +p+++se   ++++ +++l+++ sP++k++ ++aN aI
  Lsa009911 269 QLLSDTAVAIADGKNDSAMEILTRLNQVSNALGTPEQRLSFYIASALRSRLSG---------NPTTASELYGKDHIVSTQLLYDKSPCFKLALMAANDAI 359
                79999************************************************.........777777777***************************** PP

       GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLa.sRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                le  + e+ +H++Dfdi+qG+Q++ Ll+++a +R+   e   sl++T++ +  +g +++l+ +g+ L+++ ++lgvpf+fn+  + +l+dl+ ++L v+p
  Lsa009911 360 LELGQAENSIHVVDFDIGQGVQYVYLLHEIAaARKvdkETNISLKLTTFTDFGNGGADRLKLVGDGLSSLSNKLGVPFSFNI-STLKLSDLNASALMVEP 458
                ******************************977887745566*********9999**************************9.899************** PP

       GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                +E+l+Vn++++l++l+desv++e+ rdevL+ vk+lsP +v+vveq+++ n++sF +r+++++ yy al++sl+a+++r+++er+k+E+  l+r+ +n v
  Lsa009911 459 REVLVVNFAFKLYKLPDESVTTENLRDEVLRRVKGLSPALVTVVEQDLNANTASFETRVSQSCGYYGALLESLDATIGRDNSERVKIEEG-LSRKMMNSV 557
                ******************************************************************************************.********* PP

       GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaW 373
                aceg++r+er+e ++kWr+r+++aGF+p ++s+  a++  + ++       g++v+ee g + +gW++r+L+++SaW
  Lsa009911 558 ACEGRDRVERCEVFGKWRARMSMAGFEPKAMSQLRAETLVSKVNSGTrgHPGFTVKEEAGGINFGWMGRSLTVASAW 634
                ********************************98777766655543336889************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.594241613IPR005202Transcription factor GRAS
PfamPF035149.5E-99269634IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MSSGFPGGHP DYFNINIGTN NVSGRSMSMM NMTNNPQGSY RSPLAGILAD PSSQIGLRRP  60
ELMGKRSLAE FQHHHQLQQQ AAFFLRNVKQ RPYNQHASPV SPLSLVDFPN SPEVSSVSNM  120
SSSSLSSVPR YGVPVMQQVH PASVQSFNLG NGNFNGVMGN YQHNNRGNFP RVSLPNLAAK  180
QSAASQETEG KMMKRLQELE KQLLLDDEDG ENDVSGVTNS EWSETIHNIL GSTPVVKAEN  240
TVSPSPTSSS SSSCASSSAS PATPICPKQL LSDTAVAIAD GKNDSAMEIL TRLNQVSNAL  300
GTPEQRLSFY IASALRSRLS GNPTTASELY GKDHIVSTQL LYDKSPCFKL ALMAANDAIL  360
ELGQAENSIH VVDFDIGQGV QYVYLLHEIA AARKVDKETN ISLKLTTFTD FGNGGADRLK  420
LVGDGLSSLS NKLGVPFSFN ISTLKLSDLN ASALMVEPRE VLVVNFAFKL YKLPDESVTT  480
ENLRDEVLRR VKGLSPALVT VVEQDLNANT ASFETRVSQS CGYYGALLES LDATIGRDNS  540
ERVKIEEGLS RKMMNSVACE GRDRVERCEV FGKWRARMSM AGFEPKAMSQ LRAETLVSKV  600
NSGTRGHPGF TVKEEAGGIN FGWMGRSLTV ASAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-4430163537375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023760048.10.0scarecrow-like protein 8
TrEMBLA0A2J6MGI80.0A0A2J6MGI8_LACSA; Uncharacterized protein
STRINGVIT_16s0050g00950.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-131SCARECROW-like 8