PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa009911 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | GRAS | ||||||||||||
Protein Properties | Length: 635aa MW: 68912.6 Da PI: 6.9947 | ||||||||||||
Description | GRAS family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 330.7 | 2.7e-101 | 269 | 634 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 +lL + A a+++g++ a ++L+rl++ ++ g+p qRl +y++ AL++rl++ +p+++se ++++ +++l+++ sP++k++ ++aN aI Lsa009911 269 QLLSDTAVAIADGKNDSAMEILTRLNQVSNALGTPEQRLSFYIASALRSRLSG---------NPTTASELYGKDHIVSTQLLYDKSPCFKLALMAANDAI 359 79999************************************************.........777777777***************************** PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLa.sRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 le + e+ +H++Dfdi+qG+Q++ Ll+++a +R+ e sl++T++ + +g +++l+ +g+ L+++ ++lgvpf+fn+ + +l+dl+ ++L v+p Lsa009911 360 LELGQAENSIHVVDFDIGQGVQYVYLLHEIAaARKvdkETNISLKLTTFTDFGNGGADRLKLVGDGLSSLSNKLGVPFSFNI-STLKLSDLNASALMVEP 458 ******************************977887745566*********9999**************************9.899************** PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 +E+l+Vn++++l++l+desv++e+ rdevL+ vk+lsP +v+vveq+++ n++sF +r+++++ yy al++sl+a+++r+++er+k+E+ l+r+ +n v Lsa009911 459 REVLVVNFAFKLYKLPDESVTTENLRDEVLRRVKGLSPALVTVVEQDLNANTASFETRVSQSCGYYGALLESLDATIGRDNSERVKIEEG-LSRKMMNSV 557 ******************************************************************************************.********* PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaW 373 aceg++r+er+e ++kWr+r+++aGF+p ++s+ a++ + ++ g++v+ee g + +gW++r+L+++SaW Lsa009911 558 ACEGRDRVERCEVFGKWRARMSMAGFEPKAMSQLRAETLVSKVNSGTrgHPGFTVKEEAGGINFGWMGRSLTVASAW 634 ********************************98777766655543336889************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 46.594 | 241 | 613 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.5E-99 | 269 | 634 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 635 aa Download sequence Send to blast |
MSSGFPGGHP DYFNINIGTN NVSGRSMSMM NMTNNPQGSY RSPLAGILAD PSSQIGLRRP 60 ELMGKRSLAE FQHHHQLQQQ AAFFLRNVKQ RPYNQHASPV SPLSLVDFPN SPEVSSVSNM 120 SSSSLSSVPR YGVPVMQQVH PASVQSFNLG NGNFNGVMGN YQHNNRGNFP RVSLPNLAAK 180 QSAASQETEG KMMKRLQELE KQLLLDDEDG ENDVSGVTNS EWSETIHNIL GSTPVVKAEN 240 TVSPSPTSSS SSSCASSSAS PATPICPKQL LSDTAVAIAD GKNDSAMEIL TRLNQVSNAL 300 GTPEQRLSFY IASALRSRLS GNPTTASELY GKDHIVSTQL LYDKSPCFKL ALMAANDAIL 360 ELGQAENSIH VVDFDIGQGV QYVYLLHEIA AARKVDKETN ISLKLTTFTD FGNGGADRLK 420 LVGDGLSSLS NKLGVPFSFN ISTLKLSDLN ASALMVEPRE VLVVNFAFKL YKLPDESVTT 480 ENLRDEVLRR VKGLSPALVT VVEQDLNANT ASFETRVSQS CGYYGALLES LDATIGRDNS 540 ERVKIEEGLS RKMMNSVACE GRDRVERCEV FGKWRARMSM AGFEPKAMSQ LRAETLVSKV 600 NSGTRGHPGF TVKEEAGGIN FGWMGRSLTV ASAWH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-44 | 301 | 635 | 37 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023760048.1 | 0.0 | scarecrow-like protein 8 | ||||
TrEMBL | A0A2J6MGI8 | 0.0 | A0A2J6MGI8_LACSA; Uncharacterized protein | ||||
STRING | VIT_16s0050g00950.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 1e-131 | SCARECROW-like 8 |