PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa009820
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 490aa    MW: 55583.1 Da    PI: 8.5181
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58689636PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-41609PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32.1e-11338382654
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 + Er RR +i +++ +L+e++P+     +kK s a+iL ++ +YIk+L
  Lsa009820 338 TATERLRRIKISEKLRQLQEVVPSM----NKKTSVADILGLTLDYIKEL 382
                578*********************8....8*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.200.201.2E-231188No hitNo description
SuperFamilySSF561121.48E-6711296IPR011009Protein kinase-like domain
PROSITE profilePS5001132.90924299IPR000719Protein kinase domain
SMARTSM002202.5E-2524299IPR000719Protein kinase domain
PfamPF000692.1E-3927293IPR000719Protein kinase domain
PROSITE patternPS0010703055IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.102.6E-3889295No hitNo description
PROSITE patternPS001080146158IPR008271Serine/threonine-protein kinase, active site
PROSITE profilePS5088814.361332382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-12333387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.49E-9335387No hitNo description
Gene3DG3DSA:4.10.280.101.2E-10337387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-10338388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-8338382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MSDLKRFEHL KVQLEAIRSA TNNFGENHLI GKGGFGKVYK GELFHCEGHT TVALKCLDRA  60
FGQGDREFWN EILMLSLYKH ENIVPLLGFC DDGGEKILVY KYASRRGLDL YLNSNNLTWV  120
RRLEICIGAA RGLTYLHNPG ETKQRVLHRD IKSSNILLDE NWNAMIADFG LSKFCPADLQ  180
YSFIFSNPVG TFGYWDPLYT ETGLLTKESD VYSFGVVLFE VLCGRLCTGN HDNSQSFTEL  240
VRKHYKEHNL NGIIFGNIKD KINRSSLKVF SVIAYQCLKR DRNKRPLMNE ILAALETALE  300
YQQNDLGNTG AMDKLKQLQE SVPLESRAKG DPTTRPRTAT ERLRRIKISE KLRQLQEVVP  360
SMNKKTSVAD ILGLTLDYIK ELHSEAEGPN RKRKGAAVTI GRDDTMENSK KPSNKATHEN  420
TVTIGNGFAP ILNQEKEHLV KIEKNQDIDS ATGIKEPDLV EFSSLRQTTM DLDPYKDAVA  480
EIVSAKRRXW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2qkw_B7e-60230419319Protein kinase
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023728141.10.0probable serine/threonine-protein kinase PBL26 isoform X1
TrEMBLA0A2J6KSY60.0A0A2J6KSY6_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-18bHLH family protein