PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa009713

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bZIP

Protein Properties

Length: 354aa MW: 38625.3 Da PI: 6.0517

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S29949903	PU_unref	Unigene	View CDS
PUT-187a-Lactuca_sativa-51672	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.3	4.6e-10	161	217	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + l s Lsa009713 161 KRAKRILANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLTLFQRDTTGLSS 217 9****************************************9998877666655555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.4E-16	157	221	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.737	159	222	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.8E-8	161	216	No hit	No description
SuperFamily	SSF57959	7.96E-11	161	212	No hit	No description
Pfam	PF00170	5.3E-9	161	218	IPR004827	Basic-leucine zipper domain
CDD	cd14703	2.30E-23	162	211	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MQDPSNPIPN PDPNPMNAAP FPFRASHHRR AHSEVNFRLP DDLDLVSDTF DAPSGSFEEL 60 GSEDDLFCTY MDIEKLGSNL TDGGGGGSGG GGPDIGRISN SGGGGGGASE DNNGDGEKSS 120 SRPRHRHSNS MDSSSLYSES IEAKKAMAPD KLAELWTIDP KRAKRILANR QSAARSKERK 180 ARYISELERK VQTLQTEATT LSAQLTLFQR DTTGLSSENT ELKLRLQAME QQAQLRDALN 240 EALKQEVERL RVATGEIASC SDGYNLGMHH VPYNQPNFFT NQNQPDPQKY HQSNMSNHRH 300 HPLLAATHGS ALSDTLQQDP LGRFQGLDIS NRNGSHLIKT EGPSISASES SSTF

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MQDPSNPIPN PDPNPMNAAP FPFRASHHRR AHSEVNFRLP DDLDLVSDTF DAPSGSFEEL  60
GSEDDLFCTY MDIEKLGSNL TDGGGGGSGG GGPDIGRISN SGGGGGGASE DNNGDGEKSS  120
SRPRHRHSNS MDSSSLYSES IEAKKAMAPD KLAELWTIDP KRAKRILANR QSAARSKERK  180
ARYISELERK VQTLQTEATT LSAQLTLFQR DTTGLSSENT ELKLRLQAME QQAQLRDALN  240
EALKQEVERL RVATGEIASC SDGYNLGMHH VPYNQPNFFT NQNQPDPQKY HQSNMSNHRH  300
HPLLAATHGS ALSDTLQQDP LGRFQGLDIS NRNGSHLIKT EGPSISASES SSTF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023737393.1	0.0	transcription factor RF2b-like
Swissprot	O22873	1e-114	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A2J6K7C9	0.0	A0A2J6K7C9_LACSA; Uncharacterized protein
STRING	VIT_13s0067g02900.t01	1e-159	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-94	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]