PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa009420

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

G2-like

Protein Properties

Length: 339aa MW: 38272.1 Da PI: 7.4984

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58688780	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-28543	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102	3.8e-32	43	97	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt +LHe+F++av++LGG++kAtPk++l+lm+++gLtl+h+kSHLQkYRl Lsa009420 43 KPRLKWTLDLHEHFIDAVNRLGGADKATPKSVLKLMGIQGLTLYHLKSHLQKYRL 97 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.386	40	100	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.5E-29	41	98	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.87E-15	42	98	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-22	43	98	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-8	45	96	IPR001005	SANT/Myb domain
Pfam	PF14379	1.0E-23	145	191	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MYYHHNHQGK SVHSSSRISI TPERHLFLQG GGDSGLVLST DAKPRLKWTL DLHEHFIDAV 60 NRLGGADKAT PKSVLKLMGI QGLTLYHLKS HLQKYRLSKN LYRQTNSGDT NKVGMIAPAG 120 DANGETNGTQ MSNSSVCPQT NNNLQMSEAI QMQIEVQRRL HEQLEVQRHL QLRIEAQGKY 180 LQAVLEKAQE TLGKQNLGKV GVEAVKVQLS ELESKVSTHC LNSTFLGIKN VSMQTNQPTD 240 CSDDSFLTYC EGQQSEQEMI GLTFLESKKV DSDLSMTVGG HKRSEWNTSR SYNEKRFMYG 300 DEEVMLENIE RQKEFRFPYI GQKLDLNVHD VDHVASSHK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-19	42	99	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-19	42	99	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-19	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-19	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-19	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-19	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-19	42	99	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-19	42	99	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-19	42	99	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-19	42	99	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-19	42	99	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-19	42	99	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023768128.1	0.0	myb-related protein 2-like
Swissprot	Q9SQQ9	1e-111	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A2J6L4I7	0.0	A0A2J6L4I7_LACSA; Uncharacterized protein
STRING	EOY11198	1e-134	(Theobroma cacao)
STRING	XP_002525443.1	1e-134	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-113	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]