PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa009402
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WRKY
Protein Properties Length: 271aa    MW: 31157.6 Da    PI: 5.2873
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58685183PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-29676PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.19.9e-30148207159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                ++Dgy+WrKYGqK+ ++++ pr+YY+C+s+ +Cpvkkkv+rs +dp vv+ tYegeHnh+
  Lsa009402 148 VKDGYQWRKYGQKVTRDNPSPRAYYKCSSSpTCPVKKKVQRSVDDPGVVVATYEGEHNHR 207
                58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.934143209IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-28144208IPR003657WRKY domain
SuperFamilySSF1182903.01E-25145207IPR003657WRKY domain
SMARTSM007742.4E-33148208IPR003657WRKY domain
PfamPF031063.2E-24149207IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MVASSFAIDL NLFPFHKTDD TPIREVHTDD DYDDDDDDGE EEDDCSFGKE VDDHMISGDH  60
LSRINNENKK LKEMLKIVWE NYNSLQTHVK KLMQEKQVPE SNPKKRKLDE TVQQSLWKRQ  120
NWNLESPRNT GVQRVYIPTD PSDKSLVVKD GYQWRKYGQK VTRDNPSPRA YYKCSSSPTC  180
PVKKKVQRSV DDPGVVVATY EGEHNHRSTK EEAAYALANE HKISSSERRS NSPRFDEVLV  240
EKMATFLGKD PDFTAELAAA ISSKILEVDL F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-201472061674Probable WRKY transcription factor 4
2lex_A3e-201472061674Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023768619.10.0WRKY transcription factor 18-like
TrEMBLA0A2J6L3C40.0A0A2J6L3C4_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.21e-48WRKY DNA-binding protein 18