PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa009386

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bZIP

Protein Properties

Length: 468aa MW: 51741.6 Da PI: 7.3268

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58690319	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.6	2e-11	349	407	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr +r NR +A rs +RK +i eLe+kv++L++e ++L +l + +a+l+s++ Lsa009386 349 KRVKRILANRQSAARSKERKTRYITELENKVQTLQTETTTLSAQLTLFQRDSASLTSQN 407 899*****************************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.9E-17	345	409	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.772	347	410	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.9E-12	349	406	No hit	No description
SuperFamily	SSF57959	3.73E-11	349	405	No hit	No description
Pfam	PF00170	7.0E-10	349	407	IPR004827	Basic-leucine zipper domain
CDD	cd14703	2.25E-15	350	401	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MSESEEGNQR LQSSFGASSS SVPKLQSHIP FNHPDIRAQI TQFPPNINIE NTIKRVGMPQ 60 SHPQMPPLSP SSQNLTLATG ASHSRTLSQP SYFSLDSLPP LSPYRDPTSA LTSDQMVGDH 120 ESLPLPPRKT HRRSNSDIPF GFSTILQSSP PLIPSSRGLK GLEVKRESNW ERNGSESKVG 180 EKNSEGEVAD DFFSTYMNLN NLGRLNSFRG ENCEDLDSRA SGTKTNGGDN SDNEATSSNN 240 MQQRLGVTLV TDKKEGVKRS AGGEVAPTTR HYRSVSMDSI MGKMNFADES VKLLPSSGGQ 300 IGKLSPCDSI DPNSETFRLE FGNGMFSGTE LKKIMTNENL AEIALTDPKR VKRILANRQS 360 AARSKERKTR YITELENKVQ TLQTETTTLS AQLTLFQRDS ASLTSQNNEL KFRLQAMEQQ 420 AHLRDALNEA LTAEVQRLKI MSMEQNGDAA KFSQLSLDTR LYQLHQDT

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MSESEEGNQR LQSSFGASSS SVPKLQSHIP FNHPDIRAQI TQFPPNINIE NTIKRVGMPQ  60
SHPQMPPLSP SSQNLTLATG ASHSRTLSQP SYFSLDSLPP LSPYRDPTSA LTSDQMVGDH  120
ESLPLPPRKT HRRSNSDIPF GFSTILQSSP PLIPSSRGLK GLEVKRESNW ERNGSESKVG  180
EKNSEGEVAD DFFSTYMNLN NLGRLNSFRG ENCEDLDSRA SGTKTNGGDN SDNEATSSNN  240
MQQRLGVTLV TDKKEGVKRS AGGEVAPTTR HYRSVSMDSI MGKMNFADES VKLLPSSGGQ  300
IGKLSPCDSI DPNSETFRLE FGNGMFSGTE LKKIMTNENL AEIALTDPKR VKRILANRQS  360
AARSKERKTR YITELENKVQ TLQTETTTLS AQLTLFQRDS ASLTSQNNEL KFRLQAMEQQ  420
AHLRDALNEA LTAEVQRLKI MSMEQNGDAA KFSQLSLDTR LYQLHQDT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023729411.1	0.0	uncharacterized protein LOC111877103
TrEMBL	A0A2J6KQ91	0.0	A0A2J6KQ91_LACSA; Uncharacterized protein
STRING	XP_009764998.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38900.3	1e-132	bZIP family protein