PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa009299

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

HB-other

Protein Properties

Length: 1552aa MW: 175748 Da PI: 7.4186

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58697181	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	14.7	5.5e-05	676	728	7	56
--HHHHHHHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +t++q eL +l + +n+++s ++ e++A++l+Lt +qV F +R+k k Lsa009299 676 MTAHQRAELLKLVAnddSNQKLSYKKCEKIAENLNLTLEQVLRVFYDKRQKNK 728 678888888888884435********************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.63E-5	675	730	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.5E-5	675	728	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1552 aa Download sequence Send to blast
XLPAIKAVCD RLEQADGKVL VVGDIKKELG YRKTSGHRAW RSILRRLKDA HLVEEFQATV 60 NQKEVSCLRL LKTFSPKTFV PKSHGGGDDD LDTEQQVKLV NSGQNTEQLL ELPIEQQIYD 120 MIDAEGSKGL ILNEVYKRLG IKNKRYYPRI LDMVSRFQMH LESENLNRGL VYRVWTSGNF 180 NSEASTSLPS KSEDTMDDKL STQSQTQVGQ LMLTHTTQES DHRITTVNAE ASEEQNIDPI 240 GLISTGSHNL QSDTSGIIVN LNPALEISSS ASPASHVRRS YTTYPCLGFS SASSQREQRI 300 LEKLQEEKVL IKPELHRVLE SLENLDNKHT MMDRKTLERS LNKLQEDGHC KCISFAIPSV 360 TNCGRKRTVD VILHPSVYKA EDLSDIVHEK IRSFEKLIRT QCFPRHTNSK SKSIPVLNNV 420 ERIPTTNDVQ SEAFIAMREN GFVLAKMVRA KLLHVFLWEY LTGVPGWDDS ISILSGEEDD 480 VNKNPYSSCK LFELDAAIKA MPLELFLQVA GSAVKLDSMI EKCRNGIRLS DLSIPEYRSL 540 METRATARIS YVIDILRRLK LIRLIGGEFV EETHVGVGPH STTTTTTTLR HSLELKPYIE 600 EPVTVALPSP GVNSFDLRPH VRHDFVLACR KGVDEYWNTL EYCYSASDPK AALHAFPGSA 660 VHEVFLSRSW ASVRVMTAHQ RAELLKLVAN DDSNQKLSYK KCEKIAENLN LTLEQVLRVF 720 YDKRQKNKLK GAGSTKDKSS NALITYKRKR SSKVKTVNNE KTLMENLLEE SSKVKHPKLS 780 HTHVSIDDMD VQKEAADDVA LIEDEDDQPY SVSKLQQPTR TKRFPWTETA DRLLVIEYVR 840 HRATIGAKFH RAEWSSLENL PAPPETCRRR MSTLNRNNQF RKAVMRLCNM LSVRYAKHLE 900 YSKNKTLIDN RKAPDVAVHP SNELDVDEQW DDFDKNDIKI ALDEVLQYKQ VFKIAATKGS 960 SRFVSNNCPR QHEFDETNVG VGSSGNPSDE FLDSGRREGS GRRSRRRCLP KSYDKLMNRG 1020 KSFETQTYKS LAVSNAIELF KLIFLSTAKA PVVPSLLAET LRRYSEHDLF TAFNYLRDRK 1080 FMVRGNDASH FVLSQQFLHS ISSSPFPVNT GKRAVKMSRW IHERENDLLE YGVNLPADLQ 1140 CGDVLHLCLL MCSGEVSMFP CLPDEGVGEI EELKKRNRDS DDKQEQLRVE KAKKPKILDS 1200 EIFSRKEKGF PGIQLSLTRS LIPRIDAITF SEDRDTCPSV SNSSVLVASS ESTWEGMSRH 1260 ARHVASSGTF DPDMFKSVYS AIQKAGDQGL SMEGISEIII TDVQEGEKME EVIVEVLEAF 1320 GKVLKVNAYD CVHVVDSLYR SKYLLASSMA SHQHEHDLLH LKEPQTSSIN DELQENRTSA 1380 PPDEEVHRVT ILNHPQPEEE EQVAQVLIEN EKEIVKVTSP RTTGTKEGFC IGDFDVDSPC 1440 YKPILPWVNG DGSINEIVYK GLVRRVLGIV MQNPGILEDH IITQMNVLNP QSCRKLLEVM 1500 ILDSHIRVRK MYASVSNEPP AMLRGLFGCS FKKPKLVFRQ HLFANPTSIN CL

Sequence ? help Back to Top

Protein Sequence Length: 1552 aa Download sequence Send to blast

XLPAIKAVCD RLEQADGKVL VVGDIKKELG YRKTSGHRAW RSILRRLKDA HLVEEFQATV  60
NQKEVSCLRL LKTFSPKTFV PKSHGGGDDD LDTEQQVKLV NSGQNTEQLL ELPIEQQIYD  120
MIDAEGSKGL ILNEVYKRLG IKNKRYYPRI LDMVSRFQMH LESENLNRGL VYRVWTSGNF  180
NSEASTSLPS KSEDTMDDKL STQSQTQVGQ LMLTHTTQES DHRITTVNAE ASEEQNIDPI  240
GLISTGSHNL QSDTSGIIVN LNPALEISSS ASPASHVRRS YTTYPCLGFS SASSQREQRI  300
LEKLQEEKVL IKPELHRVLE SLENLDNKHT MMDRKTLERS LNKLQEDGHC KCISFAIPSV  360
TNCGRKRTVD VILHPSVYKA EDLSDIVHEK IRSFEKLIRT QCFPRHTNSK SKSIPVLNNV  420
ERIPTTNDVQ SEAFIAMREN GFVLAKMVRA KLLHVFLWEY LTGVPGWDDS ISILSGEEDD  480
VNKNPYSSCK LFELDAAIKA MPLELFLQVA GSAVKLDSMI EKCRNGIRLS DLSIPEYRSL  540
METRATARIS YVIDILRRLK LIRLIGGEFV EETHVGVGPH STTTTTTTLR HSLELKPYIE  600
EPVTVALPSP GVNSFDLRPH VRHDFVLACR KGVDEYWNTL EYCYSASDPK AALHAFPGSA  660
VHEVFLSRSW ASVRVMTAHQ RAELLKLVAN DDSNQKLSYK KCEKIAENLN LTLEQVLRVF  720
YDKRQKNKLK GAGSTKDKSS NALITYKRKR SSKVKTVNNE KTLMENLLEE SSKVKHPKLS  780
HTHVSIDDMD VQKEAADDVA LIEDEDDQPY SVSKLQQPTR TKRFPWTETA DRLLVIEYVR  840
HRATIGAKFH RAEWSSLENL PAPPETCRRR MSTLNRNNQF RKAVMRLCNM LSVRYAKHLE  900
YSKNKTLIDN RKAPDVAVHP SNELDVDEQW DDFDKNDIKI ALDEVLQYKQ VFKIAATKGS  960
SRFVSNNCPR QHEFDETNVG VGSSGNPSDE FLDSGRREGS GRRSRRRCLP KSYDKLMNRG  1020
KSFETQTYKS LAVSNAIELF KLIFLSTAKA PVVPSLLAET LRRYSEHDLF TAFNYLRDRK  1080
FMVRGNDASH FVLSQQFLHS ISSSPFPVNT GKRAVKMSRW IHERENDLLE YGVNLPADLQ  1140
CGDVLHLCLL MCSGEVSMFP CLPDEGVGEI EELKKRNRDS DDKQEQLRVE KAKKPKILDS  1200
EIFSRKEKGF PGIQLSLTRS LIPRIDAITF SEDRDTCPSV SNSSVLVASS ESTWEGMSRH  1260
ARHVASSGTF DPDMFKSVYS AIQKAGDQGL SMEGISEIII TDVQEGEKME EVIVEVLEAF  1320
GKVLKVNAYD CVHVVDSLYR SKYLLASSMA SHQHEHDLLH LKEPQTSSIN DELQENRTSA  1380
PPDEEVHRVT ILNHPQPEEE EQVAQVLIEN EKEIVKVTSP RTTGTKEGFC IGDFDVDSPC  1440
YKPILPWVNG DGSINEIVYK GLVRRVLGIV MQNPGILEDH IITQMNVLNP QSCRKLLEVM  1500
ILDSHIRVRK MYASVSNEPP AMLRGLFGCS FKKPKLVFRQ HLFANPTSIN CL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023749006.1	0.0	uncharacterized protein LOC111897275 isoform X2
TrEMBL	A0A2J6JHI2	0.0	A0A2J6JHI2_LACSA; Uncharacterized protein
STRING	XP_010273229.1	0.0	(Nelumbo nucifera)