PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa009298

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

BBR-BPC

Protein Properties

Length: 288aa MW: 31815.2 Da PI: 9.8549

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58689418	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-15111	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	286.8	9.5e-88	1	288	1	289
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssia.erdaki..........rernlalsekkaavaerd...........maflqrdkalaernkalverd 78 mdddg + rn+gyyep+ +ke+lglqlms ++ rd+k ++n s+ aa+++r ++ +rd++++ Lsa009298 1 MDDDGLNMRNWGYYEPS--FKEHLGLQLMSPLTdHRDTKSflssrdnplmMNQNG-ASSMAAAYHHRPqncvvseapipLHY-MRDSWIQR--------- 87 9***99***99..*********99779999999977777655555.56677788999977777777776666.77777776......... PP GAGA_bind 79 nkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkv 178 ++ll++l+ + + + l++++ +s+++++++q ++++++l++ ++ + + ++ + +k ++++++pk+++akk++k + ++k++ Lsa009298 88 ERLLHMLPGNPN--------FSLLPDASASNSMHMMQQQQQQQQPIDLPKDTLDDNGGGVGTGGDTGGSGPVK-KRSTTNPKTPRAKKPRKPPGVPKENG 178 678888885443........56677777777777777788899999988888777777666666666666666.688999*********877776666 PP GAGA_bind 179 kkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGyd 278 +++ +rsk k+s+d+v+ng+++D+s++P+PvCsCtGa++qCY+WG+GGWqSaCCtttiS+yPLP+stkrrgaRiagrKmS+gafkk+LekLa+eGy+ Lsa009298 179 GNHH-GQRSKVVKRSMDVVINGIDMDISGIPIPVCSCTGAPQQCYRWGSGGWQSACCTTTISMYPLPMSTKRRGARIAGRKMSNGAFKKVLEKLASEGYN 277 6555.68***************************************************************************************** PP GAGA_bind 279 lsnpvDLkdhW 289 ++n++DL+ hW Lsa009298 278 FANAIDLRLHW 288 ********* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	3.5E-132	1	288	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	2.3E-97	1	288	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MDDDGLNMRN WGYYEPSFKE HLGLQLMSPL TDHRDTKSFL SSRDNPLMMN QNGASSMAAA 60 YHHRPQNCVV SEAPIPLHYM RDSWIQRERL LHMLPGNPNF SLLPDASASN SMHMMQQQQQ 120 QQQPIDLPKD TLDDNGGGVG TGGDTGGSGP VKKRSTTNPK TPRAKKPRKP PGVPKENGGN 180 HHGQRSKVVK RSMDVVINGI DMDISGIPIP VCSCTGAPQQ CYRWGSGGWQ SACCTTTISM 240 YPLPMSTKRR GARIAGRKMS NGAFKKVLEK LASEGYNFAN AIDLRLHW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269\|PubMed:14731261, ECO:0000269\|PubMed:15722463}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023743795.1	0.0	protein BASIC PENTACYSTEINE2-like
Swissprot	Q9SKD0	2e-84	BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBL	A0A2J6JTR1	0.0	A0A2J6JTR1_LACSA; Uncharacterized protein
STRING	VIT_01s0011g06380.t01	1e-117	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	2e-79	basic pentacysteine 2