PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa009233 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | bHLH | ||||||||||||
Protein Properties | Length: 217aa MW: 24263 Da PI: 4.7225 | ||||||||||||
Description | bHLH family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.2 | 1.1e-06 | 167 | 203 | 13 | 54 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R+++++ + Lr ++P++ k++s +++L +Av+Y+k L Lsa009233 167 RREMKKMVDSLRGIVPNS-----KRMSTVDVLDEAVKYLKTL 203 6789*************9.....89***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.249 | 154 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.40E-7 | 162 | 208 | No hit | No description |
SMART | SM00353 | 2.6E-5 | 163 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-8 | 165 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-4 | 165 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-6 | 165 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MQSDQHHLLP FPNPPPFTSF FGQNVDFGQN VDFQPSKICP RNFIIFDRTD NRSQIMYHPS 60 VPVPAPGYIH VTRNDENASR EVESIMKEDS ADIDILMSFE DEEDEGEEGY EEEEEVSTAR 120 THGNDEIDTA DSCSSRLPGK GSGRGRGSGL GLSMASCKSS GVSDRKRREM KKMVDSLRGI 180 VPNSKRMSTV DVLDEAVKYL KTLKVELQNV SVVNMKN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 163 | 168 | DRKRRE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023746920.1 | 1e-161 | transcription factor bHLH144-like | ||||
TrEMBL | A0A2J6JM27 | 1e-112 | A0A2J6JM27_LACSA; Uncharacterized protein | ||||
STRING | XP_002519719.1 | 9e-44 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29950.2 | 2e-21 | bHLH family protein |