PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa009150

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Dof

Protein Properties

Length: 364aa MW: 40100.4 Da PI: 8.5446

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-12095	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	102	3.5e-32	101	152	2	53
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGg 53 ++k+l+cprC s++tkfCyynny+++qPr+fCk+C+ryWt+GG++r +P Lsa009150 101 PDKILPCPRCTSMDTKFCYYNNYNVNQPRHFCKSCQRYWTAGGTMRSMPAEQ 152 7899********************************************9654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-25	98	160	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-27	103	153	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	25.574	105	159	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	107	143	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MEDPGIKLFG KKIVLPEFSK SINLPVIFTG GGDNKDGDSD HKCFQGERVT REPPEKDQQK 60 VRSSPKAMAE ASNPRTPSID EEAGTAKSDA TNSQPKTLKK PDKILPCPRC TSMDTKFCYY 120 NNYNVNQPRH FCKSCQRYWT AGGTMRSMPA EQVAGKTRTR PLIVVNSPSP QEAFQAAAPP 180 PQAEVAATSD RTVTASDSVT ENGLNSKVSC PPNPTVSWPY SPWNPTIPIP AICPPIPIHP 240 STYWNSIPFL PPLTPARTLT SHPCEPILGK HSRDDVLINH NDSEDDLKKP KNLVLIPKTL 300 RIDDPDEAAK SSIWATLGIK NENFKAFQEK GEEKKKNSVT RTSSSFLQAN PAAFSRSLCF 360 QETV

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MEDPGIKLFG KKIVLPEFSK SINLPVIFTG GGDNKDGDSD HKCFQGERVT REPPEKDQQK  60
VRSSPKAMAE ASNPRTPSID EEAGTAKSDA TNSQPKTLKK PDKILPCPRC TSMDTKFCYY  120
NNYNVNQPRH FCKSCQRYWT AGGTMRSMPA EQVAGKTRTR PLIVVNSPSP QEAFQAAAPP  180
PQAEVAATSD RTVTASDSVT ENGLNSKVSC PPNPTVSWPY SPWNPTIPIP AICPPIPIHP  240
STYWNSIPFL PPLTPARTLT SHPCEPILGK HSRDDVLINH NDSEDDLKKP KNLVLIPKTL  300
RIDDPDEAAK SSIWATLGIK NENFKAFQEK GEEKKKNSVT RTSSSFLQAN PAAFSRSLCF  360
QETV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023761283.1	0.0	cyclic dof factor 1-like
TrEMBL	A0A2J6LJC4	0.0	A0A2J6LJC4_LACSA; Uncharacterized protein