PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa009109
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 270aa    MW: 30160.2 Da    PI: 8.2909
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58677596PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-46728PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-1856105255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 ykGVr++  +g+Wv+eIr+p   + r  r++lg+f +a eAa a++aa+++l+g
  Lsa009109  56 TYKGVRQRT-WGKWVSEIREP---N-RgSRVWLGTFNSAREAAIAYDAAARRLYG 105
                69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.32E-1955114No hitNo description
Gene3DG3DSA:3.30.730.109.1E-3056114IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2156115IPR016177DNA-binding domain
SMARTSM003804.0E-3356119IPR001471AP2/ERF domain
PfamPF008474.6E-1256105IPR001471AP2/ERF domain
PROSITE profilePS5103221.19356113IPR001471AP2/ERF domain
PRINTSPR003672.3E-95768IPR001471AP2/ERF domain
PRINTSPR003672.3E-97995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
XFTGDRVKEM LNSLMHVGNN GGGGGGGKKQ ERRTAQASSR KGCMRGKGGP ENASCTYKGV  60
RQRTWGKWVS EIREPNRGSR VWLGTFNSAR EAAIAYDAAA RRLYGPNAHV NLPDETAPAP  120
PPPPAVTEAA KEARYHRAIE QMKKQQEFER QIQIYMHQQQ QQQQQHHHHQ IKIESTTIPE  180
IPDLNAHTVA NYHTFHNHKI SHEARTGENY VHHKPSNGNL NANLPEFDDS GLWTEAASTM  240
DYQSQAIDPG IDASSFNDTI GIELNHPLMV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-1657113360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023767091.10.0ethylene-responsive transcription factor ERF003-like
TrEMBLA0A2J6L6N51e-170A0A2J6L6N5_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.19e-40ERF family protein