PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa009039

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

GRAS

Protein Properties

Length: 315aa MW: 36153.4 Da PI: 5.9645

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58679823	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	259.3	1.4e-79	2	314	38	374
GRAS 38 mqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp. 136 ++R+a+yf+eAL+ l++ + + ++p +++ + + ++ a+k+fse+sP+++f+++t+Nq Ilea++g +++Hi+Dfdi++G Q ++++q+La +p Lsa009039 2 FERAAFYFKEALQLLLHS----IINNMNPISSP-FSFILKIGAYKAFSEISPFVQFTNFTCNQSILEALDGFNQIHIVDFDIGYGDQCASFMQELALKPn 96 68*************9....77777776665.5689999******************************************************5 PP GRAS 137 .egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235 + psl+iT++ sp +++ el+ t+++L +fA+e++++fef+++ +l+ l + +r++ +Ea+aVnl+ + + + vL +vk+ls Lsa009039 97 nNLVPSLKITAFTSPM-NDHFELSLTRDNLVNFAKEINIDFEFEIV---NLDVL-FLPFRISDKEAIAVNLSPSSQIP----------FPLVLGFVKNLS 181 44489*****65.689*********************8...77777.8899********9944333..........467***** PP GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335 Pk+vv v++ +++++ +F ++++ al+ +s l +sl+a + ++ +k+E ++++++i+++v+ + + e+ ++Wr ++ ++GF p+++s+++++ Lsa009039 182 PKIVVSVDRGCERTDLPFPNHLIYALQSFSNLIESLDAV-NMNLDTLQKIELFMIQPSIEKIVTRRYSF----PEKTQNWRGQFLSVGFLPISFSNFTEN 276 ********************************776.4566999*************99998....9********************** PP GRAS 336 qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 qa +++++ g+++e+++ +lvl+W++r++vsvSaWr Lsa009039 277 QAMYVIKRAF-SGFHIEKRHSELVLCWQRREIVSVSAWR 314 9999887.99************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	34.415	1	295	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.9E-77	2	314	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
XFERAAFYFK EALQLLLHSI INNMNPISSP FSFILKIGAY KAFSEISPFV QFTNFTCNQS 60 ILEALDGFNQ IHIVDFDIGY GDQCASFMQE LALKPNNNLV PSLKITAFTS PMNDHFELSL 120 TRDNLVNFAK EINIDFEFEI VNLDVLFLPF RISDKEAIAV NLSPSSQIPF PLVLGFVKNL 180 SPKIVVSVDR GCERTDLPFP NHLIYALQSF SNLIESLDAV NMNLDTLQKI ELFMIQPSIE 240 KIVTRRYSFP EKTQNWRGQF LSVGFLPISF SNFTENQAMY VIKRAFSGFH IEKRHSELVL 300 CWQRREIVSV SAWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-30	3	314	41	375	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023736767.1	0.0	scarecrow-like protein 6, partial
Swissprot	O81316	1e-113	SCL6_ARATH; Scarecrow-like protein 6
TrEMBL	A0A2J6K8X7	0.0	A0A2J6K8X7_LACSA; Uncharacterized protein
STRING	Solyc01g090950.2.1	1e-135	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-116	GRAS family protein

Publications ? help Back to Top
Bari A,Orazova S,Ivashchenko A miR156- and miR171-binding sites in the protein-coding sequences of several plant genes. Biomed Res Int, 2013. 2013: p. 307145 [PMID:23936788] Xue XY, et al. Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet., 2014. 10(4): p. e1004266 [PMID:24699192]