PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa008965

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

HD-ZIP

Protein Properties

Length: 730aa MW: 80624.1 Da PI: 6.0994

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58695472	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.1	3.6e-19	61	116	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p+ ++r+eL ++l L+ qVk+WFqN+R+++k Lsa008965 61 KKRYHRHTQHQIQELESFFKECPHPDDKQRKELGRRLTLEPLQVKFWFQNKRTQMK 116 688999***********************************************998 PP
2	START	223.2	8.3e-70	250	470	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 ela +a++elv++a+++ep+Wv ss e +n+d++ q+f+++ + ++ea+r+s+vv+m++ +lve+l+d++ qW++ + +a+tlev+s+ Lsa008965 250 ELAVAAMEELVRMAQSGEPLWVPSSdnssETLNEDDYAQTFPRGIGpkqlgLKSEASRESAVVIMNHINLVEILMDVN-QWSNVFSgivsRAMTLEVLST 348 57899******************999999********999****************************.***************** PP T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS START 88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180 g galq+m+ae+q++splvp R+++fvRy++q+ +g+w++vdvS+d+ ++ + R++++pSg+li++++ng+skvtw+ehv++++r +h + Lsa008965 349 GvagnynGALQVMTAEYQVPSPLVPtREYYFVRYCKQHADGTWAVVDVSLDNLRPSA----MSRSRRRPSGCLIQELPNGYSKVTWIEHVEVDDRAVHDI 444 **************************************************976....89********************************* PP HHHHHHHHHHHHHHHHHHHTXXXXXX CS START 181 lrslvksglaegaktwvatlqrqcek 206 +r +v+sgla+ga++wv+tl+rqce+ Lsa008965 445 YRLVVNSGLAFGARRWVSTLDRQCER 470 **********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.0E-22	42	116	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.36E-19	43	118	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.536	58	118	IPR001356	Homeobox domain
SMART	SM00389	5.4E-16	59	122	IPR001356	Homeobox domain
CDD	cd00086	4.61E-17	61	119	No hit	No description
Pfam	PF00046	7.5E-17	61	116	IPR001356	Homeobox domain
PROSITE profile	PS50848	48.323	241	473	IPR002913	START domain
SuperFamily	SSF55961	1.03E-37	243	472	No hit	No description
CDD	cd08875	6.09E-128	245	469	No hit	No description
SMART	SM00234	1.4E-67	250	470	IPR002913	START domain
Pfam	PF01852	2.2E-58	251	470	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	5.0E-7	347	469	IPR023393	START-like domain
SuperFamily	SSF55961	2.34E-26	491	722	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence Send to blast
MFQPNMFESH HHHHLLDMSH KSPENQLDML RDDDYESKSG TDIMEAPSGD DQDPNQRPNK 60 KKRYHRHTQH QIQELESFFK ECPHPDDKQR KELGRRLTLE PLQVKFWFQN KRTQMKAQHE 120 RHENSSLRNE NEKLRMENIR YKEALTNATC PNCGGPAAIG EMSFDEQHLR IENARLREEI 180 DRISGIAAKY VGKPMLSYPN LTQNGPPRSL DLPIASFSPQ PVMVDDMFGT SSLLRSVSGP 240 SEADKPVIIE LAVAAMEELV RMAQSGEPLW VPSSDNSSET LNEDDYAQTF PRGIGPKQLG 300 LKSEASRESA VVIMNHINLV EILMDVNQWS NVFSGIVSRA MTLEVLSTGV AGNYNGALQV 360 MTAEYQVPSP LVPTREYYFV RYCKQHADGT WAVVDVSLDN LRPSAMSRSR RRPSGCLIQE 420 LPNGYSKVTW IEHVEVDDRA VHDIYRLVVN SGLAFGARRW VSTLDRQCER LASAMANNIP 480 AGDVGVITTL EGRKSMLKLA ERMVLSFCSG VGASTTHTWT TLSGSGADDV RVMTRKSVDD 540 PGRPPGIVLS AATSFWIPVP PKRVFDFLRD ENSRSEWDIL SNGGLVQEMA HIANGRDPGN 600 CVSLLRVNSA NSSQGNMLIL QESSNDSTGS YVIYAPVDIA AMNVVLSGGD PDYVALLPSG 660 FAILPDGPGK HQGGRIPEVG DGGSLLTVAF QILVDSVPTA KLSLGSVATV NSLIKCTVER 720 IKAAVAPDNP

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence Send to blast

MFQPNMFESH HHHHLLDMSH KSPENQLDML RDDDYESKSG TDIMEAPSGD DQDPNQRPNK  60
KKRYHRHTQH QIQELESFFK ECPHPDDKQR KELGRRLTLE PLQVKFWFQN KRTQMKAQHE  120
RHENSSLRNE NEKLRMENIR YKEALTNATC PNCGGPAAIG EMSFDEQHLR IENARLREEI  180
DRISGIAAKY VGKPMLSYPN LTQNGPPRSL DLPIASFSPQ PVMVDDMFGT SSLLRSVSGP  240
SEADKPVIIE LAVAAMEELV RMAQSGEPLW VPSSDNSSET LNEDDYAQTF PRGIGPKQLG  300
LKSEASRESA VVIMNHINLV EILMDVNQWS NVFSGIVSRA MTLEVLSTGV AGNYNGALQV  360
MTAEYQVPSP LVPTREYYFV RYCKQHADGT WAVVDVSLDN LRPSAMSRSR RRPSGCLIQE  420
LPNGYSKVTW IEHVEVDDRA VHDIYRLVVN SGLAFGARRW VSTLDRQCER LASAMANNIP  480
AGDVGVITTL EGRKSMLKLA ERMVLSFCSG VGASTTHTWT TLSGSGADDV RVMTRKSVDD  540
PGRPPGIVLS AATSFWIPVP PKRVFDFLRD ENSRSEWDIL SNGGLVQEMA HIANGRDPGN  600
CVSLLRVNSA NSSQGNMLIL QESSNDSTGS YVIYAPVDIA AMNVVLSGGD PDYVALLPSG  660
FAILPDGPGK HQGGRIPEVG DGGSLLTVAF QILVDSVPTA KLSLGSVATV NSLIKCTVER  720
IKAAVAPDNP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269\|PubMed:12505995}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023751202.1	0.0	homeobox-leucine zipper protein MERISTEM L1-like isoform X1
Refseq	XP_023751204.1	0.0	homeobox-leucine zipper protein MERISTEM L1-like isoform X1
Refseq	XP_023751205.1	0.0	homeobox-leucine zipper protein MERISTEM L1-like isoform X1
Refseq	XP_023751206.1	0.0	homeobox-leucine zipper protein MERISTEM L1-like isoform X1
Refseq	XP_023751207.1	0.0	homeobox-leucine zipper protein MERISTEM L1-like isoform X1
Swissprot	Q93V99	0.0	PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBL	A0A2J6M5X3	0.0	A0A2J6M5X3_LACSA; Uncharacterized protein
STRING	XP_009597904.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	0.0	protodermal factor 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]