PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa008930

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

MYB_related

Protein Properties

Length: 655aa MW: 71885 Da PI: 6.3087

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58694532	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-50950	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.4	3.8e-09	530	578	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v ++G g+W+ I r +Rt+ ++k++w+++l Lsa008930 530 PWTLSEVVKLVEGVSRYGAGRWSEIKRIAFstcSHRTPVDLKDKWRNLL 578 8*************************999999*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.471	523	582	IPR017930	Myb domain
SuperFamily	SSF46689	1.94E-16	525	584	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.1E-13	525	581	IPR009057	Homeodomain-like
SMART	SM00717	9.7E-10	527	580	IPR001005	SANT/Myb domain
CDD	cd11660	4.52E-19	529	579	No hit	No description
Pfam	PF00249	4.5E-7	530	578	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 655 aa Download sequence Send to blast
METLVAIEGS EKSKLEGTSA IVITCSDSSK QIADPVVYKL ARVEGDGRLV PATDDEVMEV 60 EDLLDDKSSV HFVLDTCQPA VCASNHETFG QEFMPMSIDS QGLFKVKDPC TLGGGSDTVF 120 GTTVDLGKLN SQFEEIGRSV SIPVDGKIEE SGDRKGSVES EPSTSTMCVN GKPDFSKLKG 180 EICLDNLSVR ELHATFKATF GRETSVKDKQ WLKRRISMGL SNSCDVSTTT FIIENNIITK 240 KPKVEEDCKD NSNLNIEKEK EKEDAFVISV GQSQSVDNHN HNHNHNHMED DKLGGSSKSV 300 KSGTTAIPKH HHMGIGSEDD KDGGKRVRKP TKRYIEVSES ESRDSGSGRL VSSVKSSGHG 360 PRTRVRPLHN IQPVTSATTR PLVTRQDSLG GSGVEIPYVS RIRRGRPREN FMALMKFQSC 420 GTGIAAKLVK TAHAVDEVEN RELKNALPTG WVQLQQPVIK EGGGGSEQYS EEASGELKND 480 SEEGQMDSYD DVEAEAEAEE EEDSDDNDNG NNILTVPTAK GGMRRKHHRP WTLSEVVKLV 540 EGVSRYGAGR WSEIKRIAFS TCSHRTPVDL KDKWRNLLRA SFAQLPAEKG VQNSKKQSSI 600 PIPAPILLRV RELAEMQSQV SPDLKQPLRF GGGHNHNSNS GSRNVNDIKS GFLXW

Sequence ? help Back to Top

Protein Sequence Length: 655 aa Download sequence Send to blast

METLVAIEGS EKSKLEGTSA IVITCSDSSK QIADPVVYKL ARVEGDGRLV PATDDEVMEV  60
EDLLDDKSSV HFVLDTCQPA VCASNHETFG QEFMPMSIDS QGLFKVKDPC TLGGGSDTVF  120
GTTVDLGKLN SQFEEIGRSV SIPVDGKIEE SGDRKGSVES EPSTSTMCVN GKPDFSKLKG  180
EICLDNLSVR ELHATFKATF GRETSVKDKQ WLKRRISMGL SNSCDVSTTT FIIENNIITK  240
KPKVEEDCKD NSNLNIEKEK EKEDAFVISV GQSQSVDNHN HNHNHNHMED DKLGGSSKSV  300
KSGTTAIPKH HHMGIGSEDD KDGGKRVRKP TKRYIEVSES ESRDSGSGRL VSSVKSSGHG  360
PRTRVRPLHN IQPVTSATTR PLVTRQDSLG GSGVEIPYVS RIRRGRPREN FMALMKFQSC  420
GTGIAAKLVK TAHAVDEVEN RELKNALPTG WVQLQQPVIK EGGGGSEQYS EEASGELKND  480
SEEGQMDSYD DVEAEAEAEE EEDSDDNDNG NNILTVPTAK GGMRRKHHRP WTLSEVVKLV  540
EGVSRYGAGR WSEIKRIAFS TCSHRTPVDL KDKWRNLLRA SFAQLPAEKG VQNSKKQSSI  600
PIPAPILLRV RELAEMQSQV SPDLKQPLRF GGGHNHNSNS GSRNVNDIKS GFLXW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023761951.1	0.0	uncharacterized protein LOC111910349 isoform X1
Refseq	XP_023761952.1	0.0	uncharacterized protein LOC111910349 isoform X1
TrEMBL	A0A2J6LHS7	0.0	A0A2J6LHS7_LACSA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	7e-89	TRF-like 6