PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa008852

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Dof

Protein Properties

Length: 320aa MW: 34986.9 Da PI: 8.352

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S29957418	PU_unref	Unigene	View CDS
gnl\|UG\|Lsa#S58687563	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-32368	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.7	1.4e-39	53	113	3	63
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +a++cprCdstntkfCyynnyslsqPryfCk+CrryWt+GG+lrn+PvGgg+rknk+sss Lsa008852 53 AAAVNCPRCDSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGTLRNIPVGGGSRKNKRSSS 113 6789*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-23	49	100	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.7E-34	55	110	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.003	56	110	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	58	94	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MDRPHWPPQE IVVKPMEEIV VPNTTNSSNN YNNLSKPSSS SSSLERRIRP QKAAAVNCPR 60 CDSTNTKFCY YNNYSLSQPR YFCKTCRRYW TEGGTLRNIP VGGGSRKNKR SSSSTTSSSL 120 TSVSKKLPDL IVPSAPTSVL SQNPRILHDH YGQDLNLGFP SANNFKNVSD FMQIPNFDAT 180 RNTNSSASTT SSITTTASAS AQLSALELLT GITARGTMNC LMPIPIPDSN SVYSQSGQLM 240 IPMPEFKIPS LSFSLDGMAS GGAYGNSLDD STDRRVLFPF EELKTNTSTT TLDEQHVAQD 300 RDQNGDSNGF WNGMMGGGSW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023742387.1	0.0	dof zinc finger protein 1-like
TrEMBL	A0A2J6JWQ8	0.0	A0A2J6JWQ8_LACSA; Uncharacterized protein
STRING	VIT_02s0025g02250.t01	1e-103	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	2e-41	Dof family protein