PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa008737
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GRF
Protein Properties Length: 297aa    MW: 34176.2 Da    PI: 8.3266
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S29955545PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.14.1e-2580123144
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e
  Lsa008737  80 DMEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVE 123
                78***************************************987 PP
2QLQ58.52e-201044236
        QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                FTaaQ+++L++Q+l+yKy+++++PvP +L++ ++
  Lsa008737 10 LFTAAQWEELEQQALIYKYMVSGVPVPTHLILSVR 44
               5******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.7E-11945IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.9611045IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.1E-141143IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.92680124IPR014977WRC domain
PfamPF088795.7E-2182123IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MMSSGSNLNL FTAAQWEELE QQALIYKYMV SGVPVPTHLI LSVRRSLYNS SFTNPSNQFG  60
VWEGNFQYNQ LYQIGGRKID MEPGRCRRTD GKKWRCSKEA YPDSKYCERH MHRGRNRSRK  120
PVEFPSSSST ATSSSSSTTA NVSSSPLTTT TNISKSISPS DHLTYHNTTL HTRSSPIQTN  180
FIDYRYLQDE RSVFFPQNDP YTSQKMTVNA PSSSDHQNYS HFNFQNLKNQ QQHKEEDIDF  240
IKSSEETKSS IQIDTKLDEI PNKXNIPPLF CTTKTNDTPS WVDVDHHHHQ HQNLITX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023772688.10.0growth-regulating factor 5-like
TrEMBLA0A2J6KU830.0A0A2J6KU83_LACSA; Uncharacterized protein
STRINGAquca_076_00086.19e-50(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.15e-45growth-regulating factor 5