PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa008690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | GRAS | ||||||||
Protein Properties | Length: 739aa MW: 83659.5 Da PI: 4.9888 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 336.5 | 4.7e-103 | 366 | 736 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 ++lL++cA+ v+++d a++ L++++++asp+gd+ qRla+ f+++L+arla+ +s+ly + ++ + s se+l+a++ + +P+ k++ + a ++ Lsa008690 366 RTLLVNCAQSVATDDYITANEQLNQIRQHASPSGDAPQRLAHIFANGLEARLAGIGSHLYMSKSTIKIS---ASEKLKAYQSYISSCPFKKIAIFFAGKM 462 689***************************************************999999766666666...9*************************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 I++a+++++++Hi+Df+i +G QWp L++ L++Rp+gpp+lR Tg++ p++g +e++eetg+rLa+++++++vpfe+n+++ +++e +++e+L+++++ Lsa008690 463 IYDAASTHSTLHIVDFGIAYGCQWPILIKHLSERPGGPPKLRFTGIDLPDPGfrPSERVEETGRRLANYCARFNVPFEYNAIAIQNWELIKIEDLKLQRN 562 ***************************************************9************************************************ PP GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299 E+laVn ++ ++l+d+sv +++rd vLkl+++++P+++v + + +++s+ F++rf eal ++s++fd+++a+l r++eer + Ere+ gre+ nv+a Lsa008690 563 ECLAVNNLISFKNLHDDSVMESNPRDGVLKLIRDMKPDMFVQTVVNGSYSSPFFVTRFKEALFHFSSMFDMFDATLDRDDEERLNFEREFCGREALNVIA 662 **************************************************************************************************** PP GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ceg er+er et+++W++r +aGFk pl+ +++ + ++ + + + +++ +++++gWk+r L ++S+W Lsa008690 663 CEGGERVERPETYKQWQARNLRAGFKIKPLERAFVSKLRGKVKAGYHKDFVFDDDGKWVLQGWKGRILRATSCW 736 *******************************************999888************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 61.23 | 339 | 717 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-100 | 366 | 736 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 739 aa Download sequence Send to blast |
MIMEPRHDEF SDYINSFSLD DESILPIFGQ SPGLANGYRF REEPLDLSFL EAPNREPNSG 60 PYTSDSSSRM STQVDSPDDF SDCVVRYINQ ILVEEDMEAK QSMFHDPLAL QATEESFYEA 120 LVEKYPPSNV EIPEENLFSS ASDYSTNSSN SNDSQWPGGD SLEAKSSSFP QTHSLEYPLL 180 SSFGSTTSVT NDGFSTLNSM VNTHIIENIF TDNESILQFN RGMEEASKFL PPSKPILIDL 240 DKYNLPSNPR QSPTKVVVKE ENVETKGNSF SGFRGRKKYH REDTSYEEER SSKQSAVFEE 300 EVELCDMFDR IVSCTYNECS STSVSEEPPK PVVNKKLQQN GHAHRYTSGW IDRSWGGSSG 360 EPTDVRTLLV NCAQSVATDD YITANEQLNQ IRQHASPSGD APQRLAHIFA NGLEARLAGI 420 GSHLYMSKST IKISASEKLK AYQSYISSCP FKKIAIFFAG KMIYDAASTH STLHIVDFGI 480 AYGCQWPILI KHLSERPGGP PKLRFTGIDL PDPGFRPSER VEETGRRLAN YCARFNVPFE 540 YNAIAIQNWE LIKIEDLKLQ RNECLAVNNL ISFKNLHDDS VMESNPRDGV LKLIRDMKPD 600 MFVQTVVNGS YSSPFFVTRF KEALFHFSSM FDMFDATLDR DDEERLNFER EFCGREALNV 660 IACEGGERVE RPETYKQWQA RNLRAGFKIK PLERAFVSKL RGKVKAGYHK DFVFDDDGKW 720 VLQGWKGRIL RATSCWVPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 8e-40 | 369 | 736 | 8 | 374 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023758828.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_023758829.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_023758830.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_023758831.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_023758832.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_023758833.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_023758834.1 | 0.0 | scarecrow-like protein 14 | ||||
Refseq | XP_023758835.1 | 0.0 | scarecrow-like protein 14 | ||||
TrEMBL | A0A2J6LPK9 | 0.0 | A0A2J6LPK9_LACSA; Uncharacterized protein | ||||
STRING | Solyc06g076280.1.1 | 0.0 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |