PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa008690
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GRAS
Protein Properties Length: 739aa    MW: 83659.5 Da    PI: 4.9888
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-18676PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS336.54.7e-1033667362373
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                ++lL++cA+ v+++d   a++ L++++++asp+gd+ qRla+ f+++L+arla+ +s+ly + ++ + s    se+l+a++ +   +P+ k++ + a ++
  Lsa008690 366 RTLLVNCAQSVATDDYITANEQLNQIRQHASPSGDAPQRLAHIFANGLEARLAGIGSHLYMSKSTIKIS---ASEKLKAYQSYISSCPFKKIAIFFAGKM 462
                689***************************************************999999766666666...9*************************** PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                I++a+++++++Hi+Df+i +G QWp L++ L++Rp+gpp+lR Tg++ p++g   +e++eetg+rLa+++++++vpfe+n+++ +++e +++e+L+++++
  Lsa008690 463 IYDAASTHSTLHIVDFGIAYGCQWPILIKHLSERPGGPPKLRFTGIDLPDPGfrPSERVEETGRRLANYCARFNVPFEYNAIAIQNWELIKIEDLKLQRN 562
                ***************************************************9************************************************ PP

       GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                E+laVn  ++ ++l+d+sv  +++rd vLkl+++++P+++v +  + +++s+ F++rf eal ++s++fd+++a+l r++eer + Ere+ gre+ nv+a
  Lsa008690 563 ECLAVNNLISFKNLHDDSVMESNPRDGVLKLIRDMKPDMFVQTVVNGSYSSPFFVTRFKEALFHFSSMFDMFDATLDRDDEERLNFEREFCGREALNVIA 662
                **************************************************************************************************** PP

       GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                ceg er+er et+++W++r  +aGFk  pl+   +++ +  ++  + + +  +++ +++++gWk+r L ++S+W
  Lsa008690 663 CEGGERVERPETYKQWQARNLRAGFKIKPLERAFVSKLRGKVKAGYHKDFVFDDDGKWVLQGWKGRILRATSCW 736
                *******************************************999888************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.23339717IPR005202Transcription factor GRAS
PfamPF035141.6E-100366736IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MIMEPRHDEF SDYINSFSLD DESILPIFGQ SPGLANGYRF REEPLDLSFL EAPNREPNSG  60
PYTSDSSSRM STQVDSPDDF SDCVVRYINQ ILVEEDMEAK QSMFHDPLAL QATEESFYEA  120
LVEKYPPSNV EIPEENLFSS ASDYSTNSSN SNDSQWPGGD SLEAKSSSFP QTHSLEYPLL  180
SSFGSTTSVT NDGFSTLNSM VNTHIIENIF TDNESILQFN RGMEEASKFL PPSKPILIDL  240
DKYNLPSNPR QSPTKVVVKE ENVETKGNSF SGFRGRKKYH REDTSYEEER SSKQSAVFEE  300
EVELCDMFDR IVSCTYNECS STSVSEEPPK PVVNKKLQQN GHAHRYTSGW IDRSWGGSSG  360
EPTDVRTLLV NCAQSVATDD YITANEQLNQ IRQHASPSGD APQRLAHIFA NGLEARLAGI  420
GSHLYMSKST IKISASEKLK AYQSYISSCP FKKIAIFFAG KMIYDAASTH STLHIVDFGI  480
AYGCQWPILI KHLSERPGGP PKLRFTGIDL PDPGFRPSER VEETGRRLAN YCARFNVPFE  540
YNAIAIQNWE LIKIEDLKLQ RNECLAVNNL ISFKNLHDDS VMESNPRDGV LKLIRDMKPD  600
MFVQTVVNGS YSSPFFVTRF KEALFHFSSM FDMFDATLDR DDEERLNFER EFCGREALNV  660
IACEGGERVE RPETYKQWQA RNLRAGFKIK PLERAFVSKL RGKVKAGYHK DFVFDDDGKW  720
VLQGWKGRIL RATSCWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-403697368374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023758828.10.0scarecrow-like protein 14
RefseqXP_023758829.10.0scarecrow-like protein 14
RefseqXP_023758830.10.0scarecrow-like protein 14
RefseqXP_023758831.10.0scarecrow-like protein 14
RefseqXP_023758832.10.0scarecrow-like protein 14
RefseqXP_023758833.10.0scarecrow-like protein 14
RefseqXP_023758834.10.0scarecrow-like protein 14
RefseqXP_023758835.10.0scarecrow-like protein 14
TrEMBLA0A2J6LPK90.0A0A2J6LPK9_LACSA; Uncharacterized protein
STRINGSolyc06g076280.1.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14