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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Lsa008582 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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| Family | WRKY | ||||||||
| Protein Properties | Length: 229aa MW: 25470 Da PI: 6.7978 | ||||||||
| Description | WRKY family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | WRKY | 89.1 | 3.6e-28 | 127 | 183 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
DgynWrKYGqK vkg++f rsYY+Ct+ +Cp++k+ve+s+ d++++ei Y +H+h+k
Lsa008582 127 DGYNWRKYGQKLVKGNTFVRSYYKCTFGNCPARKQVEHSH-DGHITEINYLWKHEHPK 183
9**************************************9.***************85 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.20.25.80 | 1.7E-25 | 120 | 184 | IPR003657 | WRKY domain |
| SuperFamily | SSF118290 | 2.62E-23 | 123 | 184 | IPR003657 | WRKY domain |
| SMART | SM00774 | 1.6E-27 | 125 | 183 | IPR003657 | WRKY domain |
| PROSITE profile | PS50811 | 21.264 | 127 | 184 | IPR003657 | WRKY domain |
| Pfam | PF03106 | 6.6E-22 | 127 | 182 | IPR003657 | WRKY domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 229 aa Download sequence Send to blast |
MDNTSNNLQL TVVPESKEQP SLSNQERNPE PIHDMHQSPS SDSGTHVSNS NQEPPVTPKK 60 ASSNTSQQTP PPPGSISEAD QENYIVAIRP EKGLDKLPLR RNIDNLTPTQ SDQGITFSKL 120 PEKPTGDGYN WRKYGQKLVK GNTFVRSYYK CTFGNCPARK QVEHSHDGHI TEINYLWKHE 180 HPKPINTLVK GSAFVLPIQS KASDDLSLVT SEASHEPETN QLQLVPVPX |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 2ayd_A | 1e-12 | 127 | 184 | 16 | 74 | WRKY transcription factor 1 |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_023770082.1 | 1e-167 | WRKY transcription factor SUSIBA2 isoform X3 | ||||
| TrEMBL | A0A2J6L029 | 1e-163 | A0A2J6L029_LACSA; Uncharacterized protein | ||||
| STRING | XP_009605529.1 | 7e-43 | (Nicotiana tomentosiformis) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G04880.2 | 3e-26 | zinc-dependent activator protein-1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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