PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa008531
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family E2F/DP
Protein Properties Length: 391aa    MW: 44206.8 Da    PI: 9.8772
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58687510PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP68.11.1e-211782171
    E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
               rkeksL++l+++fl+l++++  + + l+++a++L    v  +r RiYDi+N+Le++++++kk+kn+++w+g
  Lsa008531 17 RKEKSLGVLCSNFLRLYNREGVESIGLDNAANQL---GV--QRQRIYDIVNILESVGVLTKKAKNQYTWRG 82
               79*****************999************...**..****************************98 PP
2E2F_TDP66.53.4e-21147216165
    E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliekkekn 65 
                rkeksL+lltq+f+kl+ +s+e+ ++l+++a++L+ +      +++k+RR+YDi+NV+++ +l+ek++ +
  Lsa008531 147 RKEKSLGLLTQNFIKLFISSKEDLISLDTAATTLLGDvhdptAMRTKVRRLYDIANVFSSTGLLEKMRHP 216
                79****************************************************************6554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.3E-251583IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.81E-141680IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013727.8E-261782IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.6E-201882IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.4E-18142228IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.09E-10146215IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013727.6E-26147227IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.5E-16148214IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MALLHDSDTK VPSLYSRKEK SLGVLCSNFL RLYNREGVES IGLDNAANQL GVQRQRIYDI  60
VNILESVGVL TKKAKNQYTW RGFSAIPQAL DELRKQASSN DNLKMSQYYN FGAAVNENNC  120
RGPSNSNNSN TDTHIKPSGS QKSDTNRKEK SLGLLTQNFI KLFISSKEDL ISLDTAATTL  180
LGDVHDPTAM RTKVRRLYDI ANVFSSTGLL EKMRHPESGK PSFRRLGLKG KKETKSLQPL  240
DTNTITNSSK RRAFGTDITN NVNDSDSKRY RIESLSDWSS KEVTVAMHGN MNMNIDIVKV  300
EMESDENLCL PLHPQNQRNS KEFVFGPFRP VGMSGNKKSK ESQDWEKLAH TYRPQYHNKA  360
LGDVLGHYVE AWKSWYVEAT EKKHVQQPVV Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A1e-33162133222Transcription factor E2F8
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023739182.10.0E2F transcription factor-like E2FF isoform X1
TrEMBLA0A2J6K3K50.0A0A2J6K3K5_LACSA; Uncharacterized protein
STRINGVIT_14s0066g02370.t011e-127(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.22e-95DP-E2F-like 1