PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa008517
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family TALE
Protein Properties Length: 462aa    MW: 51080 Da    PI: 6.4084
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58686673PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-40726PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.31.1e-074114442154
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                k +yp++e++++L +++gL+ +q+ +WF N+R +
  Lsa008517 411 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 444
                569*****************************87 PP
2ELK28.73.1e-10365386122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELKh+L+++Y+++++++++E++
  Lsa008517 365 ELKHELKQGYKEKIVDIREEIL 386
                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.3E-19198242IPR005540KNOX1
PfamPF037901.5E-16201241IPR005540KNOX1
SMARTSM012561.5E-28253308IPR005541KNOX2
PfamPF037914.4E-21257307IPR005541KNOX2
PROSITE profilePS512139.969365385IPR005539ELK domain
PfamPF037891.1E-6365386IPR005539ELK domain
SMARTSM011886.1E-4365386IPR005539ELK domain
PROSITE profilePS5007111.726385448IPR001356Homeobox domain
SMARTSM003892.3E-11387452IPR001356Homeobox domain
SuperFamilySSF466894.11E-16387451IPR009057Homeodomain-like
CDDcd000861.55E-11388449No hitNo description
Gene3DG3DSA:1.10.10.604.7E-25392449IPR009057Homeodomain-like
PfamPF059201.4E-17405444IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MAYHPNHISQ DMGLQQHFSD TDNNSVLRTI LPEHHHLASA AQSSSSSRSA GKDHWLNNAI  60
LRQQDRFGGG TGDGNNNIFL NLQTNHNNSD SAATTSSQHH HHQQVANNNN NQWLSRSILQ  120
RNVSDVRGDD GVAEVSTDSI IAAAAVMSSH SSPDLNNHSR NIAASQVDNN VGGELGESEA  180
GGTDGGGGGG SLMNWQNARQ KAEVLSHPLY EQLLAAHVAC LRIATPVDQL PRIDAQLAQS  240
QQVVSKYSAL GGHGNLVHDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE  300
QSLQSLTGVS PGEGTGATMS DDDEDQVDSD ANLFDGSLDG HDTMGFGPLV PTESERSLME  360
RVRQELKHEL KQGYKEKIVD IREEILRKRR AGKLPGDTTS VLKAWWQSHA KWPYPTEEDK  420
ARLVQETGLQ LKQINNWFIN QRKRNWHSNP SSSTVLKSKR KX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12388452872Homeobox protein PKNOX1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023765631.10.0homeobox protein knotted-1-like 2 isoform X2
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A2J6LA360.0A0A2J6LA36_LACSA; Uncharacterized protein
STRINGXP_010265705.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-178KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]