PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa008509
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C3H
Protein Properties Length: 376aa    MW: 42399.3 Da    PI: 7.4471
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-2795PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH278e-09138158526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 C +f+r G C++Gd+C FaHg
  Lsa008509 138 VCADFRR-GSCSRGDSCEFAHG 158
                5999***.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.91E-5132162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.281133160IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6133159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-6137160IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-7138158IPR000571Zinc finger, CCCH-type
SMARTSM003564.1168191IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MASGCLEQHR FHPSHQIYLA SKKSLRDIDI PPRKLLSRRA SASSQEALID SMYHQQQNES  60
PRVLPEETLF KKFLPYNSGV DSDEDADPYS ADHFRIYEFK VRKCTRSRSH DWTDCPFAHP  120
GEKARRRCPR RYNYLGTVCA DFRRGSCSRG DSCEFAHGVF ECWLHPSRYR TEACKDGKNC  180
QRKICFFAHT PRQLRVVPPE TTVPAKKHHS ETCHCCAHCR CLSSVHHINS PTSTLNIDID  240
SLSLSPPASP PFSPARSGAG FSPISRFADR LARAESLGMT QFGNNSCMQN ESMNELISNQ  300
SLTELMRSME AMSVEENMNM NSQWVDECFN NGCGGVYDLS DSTPTSFSRS SSSSQNVYND  360
SPVNGPDLGW VNDLLT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023736430.10.0zinc finger CCCH domain-containing protein 2-like
SwissprotQ9ZWA11e-71C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A2J6K9F90.0A0A2J6K9F9_LACSA; Uncharacterized protein
STRINGXP_009789499.11e-110(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.18e-71C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]