PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa008494
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 336aa    MW: 35978.8 Da    PI: 9.8708
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-15122PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-174392255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a+  l+g
  Lsa008494 43 KYRGVRQRS-WGKWVAEIREPRK---RTRRWLGTFATAEDAARAYDRAAVILYG 92
               7*****999.**********954...5999******************977765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.23443100IPR001471AP2/ERF domain
CDDcd000182.08E-2043100No hitNo description
SMARTSM003801.5E-3743106IPR001471AP2/ERF domain
PfamPF008475.2E-114387IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-2943100IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-2043100IPR016177DNA-binding domain
PRINTSPR003673.3E-104455IPR001471AP2/ERF domain
PRINTSPR003673.3E-106682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
LIPNTSSPPP ITTASGGTAS GSPPRNNNRK PKGKGGPDNG KFKYRGVRQR SWGKWVAEIR  60
EPRKRTRRWL GTFATAEDAA RAYDRAAVIL YGSRAQLNLQ QPSVDGNSTA TAAAAATTSA  120
SSSPRGAGSG SGSSTSASKT QTLRPILPRP ASFNLTFSPS QTTPSGVPIL ANYVPYPFYP  180
TVHHSTNSGE NIVQYAMQLV QPYQYLAYPN LNKINVVEGE DPTLRMTTTS TTTSYDPNAN  240
PNPRNKDCQR EQLQPVQQCQ KHRPTKEEIN SLVGSVGSSL SLVSNSPPTM MAGTSVSDPT  300
SVAGGNPSSP SLWAATNDDE YPPPSIWDYG DPSFDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-174499359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023732087.11e-150ethylene-responsive transcription factor ABI4-like, partial
TrEMBLA0A2J6KJI01e-131A0A2J6KJI0_LACSA; Uncharacterized protein
STRINGVIT_13s0067g01400.t016e-61(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.13e-22ERF family protein