PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa008440
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family TALE
Protein Properties Length: 467aa    MW: 52151.2 Da    PI: 6.1764
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58688016PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-47372PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.51.9e-074034362154
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                k +yp++e++++L +++gL+ +q+ +WF N+R +
  Lsa008440 403 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 436
                569*****************************87 PP
2ELK28.63.1e-10357378122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELKh+L+++Y+++++++++E++
  Lsa008440 357 ELKHELKQGYKEKIVDIREEIL 378
                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.0E-19189233IPR005540KNOX1
PfamPF037904.9E-17191232IPR005540KNOX1
SMARTSM012565.1E-30243298IPR005541KNOX2
PfamPF037913.8E-21247297IPR005541KNOX2
PROSITE profilePS512139.969357377IPR005539ELK domain
SMARTSM011886.1E-4357378IPR005539ELK domain
PfamPF037891.1E-6357378IPR005539ELK domain
PROSITE profilePS5007111.758377440IPR001356Homeobox domain
SMARTSM003895.0E-11379444IPR001356Homeobox domain
SuperFamilySSF466894.71E-16379443IPR009057Homeodomain-like
CDDcd000866.24E-12380441No hitNo description
Gene3DG3DSA:1.10.10.609.3E-25384441IPR009057Homeodomain-like
PfamPF059201.4E-17397436IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MAFHPNHLQQ QMALQQHFSD TDNNSVLRTI LPDHHHLAVA AQSSSPSSRS AGKDHWLNSA  60
ILRQQGQYAG GATDGSNNFL NLQTNNNSDS PVSTSSQHLH HHHHHQQGGN NNQWLSRSML  120
QRNVSDVGGD DIVTQVSNDS IIAAMSSHDS PDLNNNQSRT IVNSQVDNNG GGELGESEDG  180
GGDVNWQNAR YKAEVLSHPL YEQLLSAHVA CLRIATPVDQ LPRIDAQLAQ SQHVVSKYSG  240
FEGQSNLGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS  300
PGEGTGATMS DDDEDQVDES DNANLFDGSF DGHDSMGFGP LVPTESERSL MERVRQELKH  360
ELKQGYKEKI VDIREEILRK RRAGKLPGDT TSVLKSWWQS HAKWPYPTEE DKARLVQETG  420
LQLKQINNWF INQRKRNWHS NPSSSTVLKT KRKSNAGDKS SDHNMLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A6e-13380444872Homeobox protein PKNOX1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023747025.10.0homeobox protein knotted-1-like 4 isoform X2
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A2J6JLQ90.0A0A2J6JLQ9_LACSA; Uncharacterized protein
STRINGVIT_04s0008g06130.t010.0(Vitis vinifera)
STRINGXP_010265705.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-176KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]