PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa008366
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GATA
Protein Properties Length: 339aa    MW: 36662.2 Da    PI: 6.2999
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-35238PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA534.6e-17257293135
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++Cg ++  Tp++Rrgpdg++tLCnaCGl+++ kgl
  Lsa008366 257 CRHCGISSksTPMMRRGPDGPRTLCNACGLKWANKGL 293
                *****99999***********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.0E-11123158IPR010399Tify domain
PROSITE profilePS5132014.393123158IPR010399Tify domain
PfamPF062009.1E-12127157IPR010399Tify domain
PROSITE profilePS5101713.235190232IPR010402CCT domain
PfamPF062038.4E-16190232IPR010402CCT domain
SMARTSM004016.4E-13251304IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.143251299IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-12252302No hitNo description
Gene3DG3DSA:3.30.50.101.3E-14255298IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.02E-14256306No hitNo description
PROSITE patternPS003440257284IPR000679Zinc finger, GATA-type
PfamPF003201.5E-14257293IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MSDANISNQH LHRATYEPVS IQRHHHQQQG ITINSNNDDG NQHHMVDDVV VEEDDDDVPG  60
GEEESIDNPN QIRYDHHNPH HQHHGLQNGG GLEGGMEEMS APPHGLYVPE SEIQQHAVGG  120
GGGTGGADQL TLSFQGEVYV FDAVSPEKVQ SVLLLLGGYE VPTGVTSLGI PPQNQRDLAE  180
FPARSSQSQR AASLIRFREK RKERCFDKKI RYTVRKEVAL RMQRKKGQFT STKATSDVSG  240
SSSDWNGGPT QDEETTCRHC GISSKSTPMM RRGPDGPRTL CNACGLKWAN KGLLRDLSKV  300
SASGSQEAGG KSNNLDAGNV NAAVLVVSNG DSSGVAGER
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023763021.10.0GATA transcription factor 24-like
SwissprotQ8GXL74e-83GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2J6LFF60.0A0A2J6LFF6_LACSA; Uncharacterized protein
STRINGXP_009609389.11e-109(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.24e-81ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]