PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa008209 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 208aa MW: 24134.3 Da PI: 6.5292 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.9 | 9.7e-20 | 55 | 107 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eq++ Le+ F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k Lsa008209 55 KRKLSDEQVNLLEQNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWK 107 45899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 120.3 | 1e-38 | 54 | 145 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+ls+eqv+lLE++F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+ + e+++Le+e +L+e+l+e Lsa008209 54 RKRKLSDEQVNLLEQNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKSQHDSTVLEKCQLESEILKLKEQLSE 145 8****************************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.248 | 49 | 109 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.4E-18 | 52 | 113 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.19E-18 | 53 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 5.03E-16 | 54 | 110 | No hit | No description |
Pfam | PF00046 | 6.2E-17 | 55 | 107 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-21 | 56 | 116 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.3E-5 | 80 | 89 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 84 | 107 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.3E-5 | 89 | 105 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MTSNMKTQVD DQMVLLSQYY PGIYDQLIPE QGEVVKPRRR RKKNKADGNS SMMRKRKLSD 60 EQVNLLEQNF GNEHKLESER KDRLASELGL DPRQVAVWFQ NRRARWKSKK LEEEYSKLKS 120 QHDSTVLEKC QLESEILKLK EQLSEAEKQI NSLVERSDGI SSTSPCSSFS MEAMEPHFLG 180 GFGMEGLENV FCLPENNYIH GSLDWMNI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 38 | 56 | RRRKKNKADGNSSMMRKRK |
2 | 40 | 56 | RKKNKADGNSSMMRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023734160.1 | 1e-154 | homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | O23208 | 9e-72 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A2J6KEM1 | 1e-142 | A0A2J6KEM1_LACSA; Uncharacterized protein | ||||
STRING | XP_009775418.1 | 2e-88 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 3e-57 | homeobox protein 40 |
Publications ? help Back to Top | |||
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