PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa008196
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 307aa    MW: 33950.7 Da    PI: 5.4661
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-35232PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-19109158255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+G+r+++ +g+W+AeIrdps+     r++lg+f taeeAa a++a +++++g
  Lsa008196 109 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTFNTAEEAAHAYDAEARRIRG 158
                69*******.**********965...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.28E-22109167IPR016177DNA-binding domain
CDDcd000182.51E-33109168No hitNo description
SMARTSM003801.0E-37109172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-33109167IPR001471AP2/ERF domain
PROSITE profilePS5103223.551109166IPR001471AP2/ERF domain
PRINTSPR003672.5E-11110121IPR001471AP2/ERF domain
PfamPF008479.3E-12110158IPR001471AP2/ERF domain
PRINTSPR003672.5E-11132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MCGGAIISDC IAPTTNRSPR LTAELLWNTH LLTSPSNRYS KRFPSHATDL DDDFEADFQG  60
FQDELEIEVD ISKSFPVSSS KHSAPASGLS SIKQDDEAEK SGSRKRKNQY RGIRQRPWGK  120
WAAEIRDPSK GVRVWLGTFN TAEEAAHAYD AEARRIRGSK AKVNFPDVTS SLRQAVKPKS  180
QKRLPKVNST LNQDMNNRNY GSLESVKKKP QVTPVDTFED MFEVSYVGSD HGSNSDFGYM  240
SPAKKLKSDS SNVVAEGDMS LSDDLLFQMP CFEESWGSCS IDAFVNGGSG VDLWTCDDLA  300
AMMDGSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-23109166260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023734647.10.0ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A2J6MCE00.0A0A2J6MCE0_LACSA; Uncharacterized protein
STRINGMigut.I01124.1.p7e-84(Erythranthe guttata)