PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa008187

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

GATA

Protein Properties

Length: 348aa MW: 38113.1 Da PI: 5.2736

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-16315	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	55.1	1.1e-17	255	288	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C tkTp+WR gp g+ktLCnaCG++y++ + Lsa008187 255 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 288 99*****************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	2.9E-70	1	331	IPR016679	Transcription factor, GATA, plant
SMART	SM00401	5.8E-16	249	299	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	11.24	253	285	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.0E-14	253	286	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	5.7E-15	253	312	No hit	No description
CDD	cd00202	1.17E-14	254	311	No hit	No description
PROSITE pattern	PS00344	0	255	280	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	2.4E-15	255	288	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MEGQTYNEEI DCGSFFDQID DFIEFPPVND TTLNNSIDCN DFADIWTNNS DELQVSDPIF 60 SDSNPAPALS AELSVPYEDI IQLEWLSNFV EDSFSGGGMT MNKENIPAKT MNKENIPAKT 120 EPVVVANYHF QMSSPVSVLE SSSSSSSSSS CSGSGTGGMM IPLSPTHRGP QRARSKRSRP 180 ATFNPRAAIE LLSPPNLIPI PIPIPGSMES AIPVEKKRKK KPKKKPEAAQ FNPEDNNENG 240 IENQKMGTGE GVRKCMHCEI TKTPQWRAGP MGPKTLCNAC GVRYKSGRLF PEYRPAASPT 300 FVPSVHSNSH KKVVEMRTKC MPIEVLGSVQ VPVGPELIPN PNPLPEYI

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MEGQTYNEEI DCGSFFDQID DFIEFPPVND TTLNNSIDCN DFADIWTNNS DELQVSDPIF  60
SDSNPAPALS AELSVPYEDI IQLEWLSNFV EDSFSGGGMT MNKENIPAKT MNKENIPAKT  120
EPVVVANYHF QMSSPVSVLE SSSSSSSSSS CSGSGTGGMM IPLSPTHRGP QRARSKRSRP  180
ATFNPRAAIE LLSPPNLIPI PIPIPGSMES AIPVEKKRKK KPKKKPEAAQ FNPEDNNENG  240
IENQKMGTGE GVRKCMHCEI TKTPQWRAGP MGPKTLCNAC GVRYKSGRLF PEYRPAASPT  300
FVPSVHSNSH KKVVEMRTKC MPIEVLGSVQ VPVGPELIPN PNPLPEYI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	214	221	EKKRKKKP
2	215	219	KKRKK
3	215	223	KKRKKKPKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023766533.1	0.0	GATA transcription factor 8-like
TrEMBL	A0A2J6L7Z7	0.0	A0A2J6L7Z7_LACSA; GATA transcription factor
STRING	XP_009760862.1	1e-108	(Nicotiana sylvestris)