PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lsa008163 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
|
||||||||
Family | EIL | ||||||||
Protein Properties | Length: 603aa MW: 67954.5 Da PI: 5.5648 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 507.3 | 7.6e-155 | 41 | 420 | 1 | 354 |
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkekve 100 +el++rmw+d+mll+rlk+++k ke ++++k+++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipe+gkpv+gasd+LraWWkekv+ Lsa008163 41 DELERRMWRDRMLLRRLKDQNKG----KE--VDNAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPENGKPVSGASDNLRAWWKEKVR 134 79******************998....55..59999**************************************************************** PP XXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--.-----GGG CS EIN3 101 fdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgtppykkphd 200 fdrngpaai+kyqa++ ++++++++ + s++h+l+elqDTtlgSLLsalmqhcdppqrrfplekgv+pPWWPtG+e+ww++lgl+k+qgtppykkphd Lsa008163 135 FDRNGPAAIAKYQADHSVSGKNEDS-CAVVSTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVAPPWWPTGDEEWWSQLGLPKEQGTPPYKKPHD 233 ******************9988887.559*********************************************************************** PP --HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXX CS EIN3 201 lkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss...slrkqspkvtlsceqkedvegkkeskikhvqa 297 lkkawkv+vLtavikhmsp+i++ir+l+rqsk+lqdkm+akes+++l+++nqee++ ++++++s s+ +s ++ +s+ +++dv+g +++++ +v+ Lsa008163 234 LKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEALSRKLYPDSCppiSSAAGSGSYLVSDTSDYDVDGVEDEQTIEVED 333 ***************************************************************444578888****************666666677888 PP XXXXX...........................XXXXXXXXXXXXXXXX.....XXXXX......XXXXXXX.XXXXXXXXXXXXXXXXX CS EIN3 298 vktta...........................gfpvvrkrkkkpsesa.....kvsskevsrtcqssqfrgsetelifadknsisqney 354 +k +++++krk++++e++ ++ k ++tc++sq+++s+ +++f+d+ s++++++ Lsa008163 334 CKPVYtlgqvglmgsmvpqlaqvkgelidiasPETFIQKRKQPSDERQppppaVMEPK--IYTCEHSQCPYSDIRVGFQDRFSRNNHQM 420 888779*************************988999999988888762222134444..7**************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 1.3E-130 | 41 | 287 | No hit | No description |
Gene3D | G3DSA:1.10.3180.10 | 7.5E-76 | 162 | 297 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
SuperFamily | SSF116768 | 7.32E-62 | 166 | 290 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 603 aa Download sequence Send to blast |
MGFYGNLDFL AAPPCEGDRP PEVEQEAPME DDYSDEEMDV DELERRMWRD RMLLRRLKDQ 60 NKGKEVDNAK QRQSQEQARR KKMSRAQDGI LKYMLKMMEV CKAQGFVYGI IPENGKPVSG 120 ASDNLRAWWK EKVRFDRNGP AAIAKYQADH SVSGKNEDSC AVVSTPHTLQ ELQDTTLGSL 180 LSALMQHCDP PQRRFPLEKG VAPPWWPTGD EEWWSQLGLP KEQGTPPYKK PHDLKKAWKV 240 GVLTAVIKHM SPDIAKIRKL VRQSKCLQDK MTAKESATWL AIINQEEALS RKLYPDSCPP 300 ISSAAGSGSY LVSDTSDYDV DGVEDEQTIE VEDCKPVYTL GQVGLMGSMV PQLAQVKGEL 360 IDIASPETFI QKRKQPSDER QPPPPAVMEP KIYTCEHSQC PYSDIRVGFQ DRFSRNNHQM 420 SCPYRPTPNP NHNPSRGGTL NFQINNLQKE PVFAMPSFAQ PKITTAPAVN QEKQFVSSQL 480 GLPGDGQRRI SDLMSFYDTN LQQPNRNLNS GNLDVVGVGD HQKQKFPIQI DDDFFVHSVE 540 SNNQSTFLPT TGFHFENKTP YNPAFDANSN LDFRFVSQSP FSLGGVDFSG DPTPAPDMSM 600 WYL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4zds_A | 2e-81 | 164 | 297 | 1 | 134 | Protein ETHYLENE INSENSITIVE 3 |
4zds_B | 2e-81 | 164 | 297 | 1 | 134 | Protein ETHYLENE INSENSITIVE 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor acting as a positive regulator in the ethylene response pathway. Is required for ethylene responsiveness in adult plant tissues. Binds a primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter with consequence to activate the transcription of this gene. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023761250.1 | 0.0 | ETHYLENE INSENSITIVE 3-like 1 protein | ||||
Swissprot | O24606 | 0.0 | EIN3_ARATH; Protein ETHYLENE INSENSITIVE 3 | ||||
TrEMBL | A0A2U1PGD3 | 0.0 | A0A2U1PGD3_ARTAN; Ethylene insensitive 3 family protein | ||||
STRING | VIT_13s0047g00250.t01 | 0.0 | (Vitis vinifera) |