PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa008056
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MIKC_MADS
Protein Properties Length: 237aa    MW: 27213 Da    PI: 8.7092
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S32121923PU_unrefUnigeneView CDS
gnl|UG|Lsa#S58673738PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-4627PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.75.5e-271059251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               ri+n++ rqvtfskRr g+lKKA+EL +LCdaev v+ifsstgkl+e+s+
  Lsa008056 10 RIDNSTSRQVTFSKRRSGLLKKAKELAILCDAEVGVMIFSSTGKLHEFSN 59
               8***********************************************95 PP
2K-box85.41.2e-2880169998
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                +  ++   +q+e+a Lk+++++Lq+++R+++Ge+L+ Ls+k+Lq +e+qLe sl+ iR kK++ll+e+ieel +k + +++en +L kk+
  Lsa008056  80 TPISEVRFWQREAAMLKQQLQSLQENHRRMMGEELSGLSVKDLQGMESQLEMSLRGIRMKKDQLLFEEIEELSRKGNLIHHENVELCKKV 169
                55678899******************************************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.034161IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-38160IPR002100Transcription factor, MADS-box
CDDcd002656.55E-44277No hitNo description
SuperFamilySSF554555.23E-32288IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-27323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-2783169IPR002487Transcription factor, K-box
PROSITE profilePS5129715.52185175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRSGLLK KAKELAILCD AEVGVMIFSS TGKLHEFSNT  60
SMKSVIDRYH KAKDEQQMTT PISEVRFWQR EAAMLKQQLQ SLQENHRRMM GEELSGLSVK  120
DLQGMESQLE MSLRGIRMKK DQLLFEEIEE LSRKGNLIHH ENVELCKKVT QIREENTELY  180
NKIYGIRDGE AANRNVFLTN GSSMREDPHP PIHLQLSQPD QHDATDQAPL HSTNLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-18169169MEF2C
5f28_B1e-18169169MEF2C
5f28_C1e-18169169MEF2C
5f28_D1e-18169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269|PubMed:17704216, ECO:0000269|PubMed:24876250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the micro RNA miR824. {ECO:0000269|PubMed:18579782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023750508.11e-177MADS-box transcription factor 23-like isoform X3
SwissprotA2RVQ51e-101AGL16_ARATH; Agamous-like MADS-box protein AGL16
TrEMBLA0A2J6M7I31e-159A0A2J6M7I3_LACSA; Uncharacterized protein
STRINGVIT_18s0001g07900.t011e-119(Vitis vinifera)
STRINGXP_002527350.11e-119(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-103AGAMOUS-like 16
Publications ? help Back to Top
  1. Yang K,Jiang M,Le J
    A new loss-of-function allele 28y reveals a role of ARGONAUTE1 in limiting asymmetric division of stomatal lineage ground cell.
    J Integr Plant Biol, 2014. 56(6): p. 539-49
    [PMID:24386951]