PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa007983

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

GRAS

Protein Properties

Length: 656aa MW: 74389.5 Da PI: 6.8336

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58693615	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-8800	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	366.7	3.1e-112	280	654	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l++lL+ cA+ vs++d+ ++ lL++++++asp+gd mqRla+yf +L+ar+a+s++++y++l +++ts ++ l+a++lf + P+ k+sh++ N+ Lsa007983 280 LRTLLTLCAQSVSTNDQIGVTDLLKKIRQHASPTGDGMQRLAHYFSIGLEARMAGSGTGIYNSLISKPTS---AIDILKAYHLFLGILPFTKLSHFVSNK 376 5789***********************************************************99999...9********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 +I + ++++++HiiDf+i +G+QWp+ +q+L+sRp+gpp+lRiTg++ p +g ++++eetg+rL+++Ae++gv+f+f++ +a+++e+++l++L++++ Lsa007983 377 TIIQTSQNKTKLHIIDFGIFYGFQWPSVIQSLSSRPGGPPELRITGIDFPCPGfrPSQRVEETGSRLSNYAETFGVKFKFKA-IAQKWETITLQDLELDS 475 **********************************************99999***********************.7************ PP GRAS 199 gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 +E+l+Vn+ ++l +llde+v ++ +r++vLkl+k+++P++++ + ++n++ F++rf eal ++s+lfd lea+++re eer+ +Er + gre++n Lsa007983 476 EETLIVNCPYRLRNLLDETVMADNdsPRNKVLKLIKETNPQIFIQGIVNGSYNAPFFVTRFREALFFFSSLFDLLEANVGREVEERMLIERTIWGREAMN 575 ***************98887779********************************************************************* PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 v+aceg er+er et+++W+ r ++ GF++v+++ ++ + ak r + + + ++e+ g++++gWk+r L+++S+W+ Lsa007983 576 VIACEGGERIERPETYKQWQVRNQRIGFRQVAFDREILEVAKEKTRLLGyHKDFVIDEDGGWMLQGWKGRILYAISCWK 654 **************************************99999998899***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.821	254	633	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-109	280	654	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence Send to blast
MVMDGRLKVE YGSLNLNAMK RNEYASILSD QNFLNAMNLN ESSIDWNSIT SLPDSAASNH 60 ILPSSLNDKG DHHEDLDFSD LVLKYINQML MEEDIEEKNC MLQKSAALHA TEKSFYDALM 120 KKELPYDKYA TSESITYING RDLSCDVTDS PLLPNPLIDF DSQSRFHPSV SSTSNVVDSP 180 VSILSFPDTV KVEIKHEINS IPDESRGKKN HHSKDHSDDE RTSKQSAVYA EPTVRSKMFD 240 EILLYGGGNK THPFKSQPKE SKPVKSRGKK QGSKKEVVDL RTLLTLCAQS VSTNDQIGVT 300 DLLKKIRQHA SPTGDGMQRL AHYFSIGLEA RMAGSGTGIY NSLISKPTSA IDILKAYHLF 360 LGILPFTKLS HFVSNKTIIQ TSQNKTKLHI IDFGIFYGFQ WPSVIQSLSS RPGGPPELRI 420 TGIDFPCPGF RPSQRVEETG SRLSNYAETF GVKFKFKAIA QKWETITLQD LELDSEETLI 480 VNCPYRLRNL LDETVMADND SPRNKVLKLI KETNPQIFIQ GIVNGSYNAP FFVTRFREAL 540 FFFSSLFDLL EANVGREVEE RMLIERTIWG REAMNVIACE GGERIERPET YKQWQVRNQR 600 IGFRQVAFDR EILEVAKEKT RLLGYHKDFV IDEDGGWMLQ GWKGRILYAI SCWKPC

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence Send to blast

MVMDGRLKVE YGSLNLNAMK RNEYASILSD QNFLNAMNLN ESSIDWNSIT SLPDSAASNH  60
ILPSSLNDKG DHHEDLDFSD LVLKYINQML MEEDIEEKNC MLQKSAALHA TEKSFYDALM  120
KKELPYDKYA TSESITYING RDLSCDVTDS PLLPNPLIDF DSQSRFHPSV SSTSNVVDSP  180
VSILSFPDTV KVEIKHEINS IPDESRGKKN HHSKDHSDDE RTSKQSAVYA EPTVRSKMFD  240
EILLYGGGNK THPFKSQPKE SKPVKSRGKK QGSKKEVVDL RTLLTLCAQS VSTNDQIGVT  300
DLLKKIRQHA SPTGDGMQRL AHYFSIGLEA RMAGSGTGIY NSLISKPTSA IDILKAYHLF  360
LGILPFTKLS HFVSNKTIIQ TSQNKTKLHI IDFGIFYGFQ WPSVIQSLSS RPGGPPELRI  420
TGIDFPCPGF RPSQRVEETG SRLSNYAETF GVKFKFKAIA QKWETITLQD LELDSEETLI  480
VNCPYRLRNL LDETVMADND SPRNKVLKLI KETNPQIFIQ GIVNGSYNAP FFVTRFREAL  540
FFFSSLFDLL EANVGREVEE RMLIERTIWG REAMNVIACE GGERIERPET YKQWQVRNQR  600
IGFRQVAFDR EILEVAKEKT RLLGYHKDFV IDEDGGWMLQ GWKGRILYAI SCWKPC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-54	263	655	2	380	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023745136.1	0.0	scarecrow-like protein 9
TrEMBL	A0A2J6JQX2	0.0	A0A2J6JQX2_LACSA; Uncharacterized protein
STRING	Migut.F00778.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-173	GRAS family protein