PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa007939

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

C3H

Protein Properties

Length: 416aa MW: 48000.4 Da PI: 8.8674

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58686721	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.8	7.6e-08	398	416	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+++a+ G C yG +CkF H Lsa007939 398 CKYYAQ-GRCTYGTNCKFLH 416 ****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF68906	3.66E-7	79	123	No hit	No description
Gene3D	G3DSA:1.10.720.30	1.4E-8	80	123	IPR003034	SAP domain
PROSITE profile	PS50800	10.046	89	123	IPR003034	SAP domain
SMART	SM00513	0.0012	89	123	IPR003034	SAP domain
Pfam	PF02037	1.4E-9	90	123	IPR003034	SAP domain
PROSITE profile	PS50103	14.709	392	416	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.27E-6	392	416	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.8E-5	396	416	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.9E-5	398	416	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MIPEIYVEDV DSQPEMCDSD DSQDDPSFDI LEETQSRLSN LSIKNKSKSR IPVKVVDDVD 60 CIEIVEPVLD ANDQKTYEIV QKTIEVGQVE KLKVEQCKLY LRKHGLRLTG KKDILIDRIK 120 EHISIMNGEG EHKYPASSFV MNCKGDACTG DIVMFEQNVY EMFSIVSRSA NGPPCGTRIV 180 AGRIVKESYG AAKQQHTFTV EVLWSKGVKP LPPLHPLLIK GRNLYRLKTM RQRWEDESER 240 QKILSEKHAR GNAARTNRET RIQEKEKKKA LRENKSSKGN IQNSRNSINL HNKSIQHEAK 300 ILCVGLIDNN NHHGGSYKEN VNCNTLRNPV RRDCNMEFYH HHPLRQFERR EYDDMRESMG 360 PQSYIFQGGG NNGYKPMGHN QVQRGQFCKY QEKRGQFCKY YAQGRCTYGT NCKFLH

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MIPEIYVEDV DSQPEMCDSD DSQDDPSFDI LEETQSRLSN LSIKNKSKSR IPVKVVDDVD  60
CIEIVEPVLD ANDQKTYEIV QKTIEVGQVE KLKVEQCKLY LRKHGLRLTG KKDILIDRIK  120
EHISIMNGEG EHKYPASSFV MNCKGDACTG DIVMFEQNVY EMFSIVSRSA NGPPCGTRIV  180
AGRIVKESYG AAKQQHTFTV EVLWSKGVKP LPPLHPLLIK GRNLYRLKTM RQRWEDESER  240
QKILSEKHAR GNAARTNRET RIQEKEKKKA LRENKSSKGN IQNSRNSINL HNKSIQHEAK  300
ILCVGLIDNN NHHGGSYKEN VNCNTLRNPV RRDCNMEFYH HHPLRQFERR EYDDMRESMG  360
PQSYIFQGGG NNGYKPMGHN QVQRGQFCKY QEKRGQFCKY YAQGRCTYGT NCKFLH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023735652.1	0.0	zinc finger CCCH domain-containing protein 62-like
TrEMBL	A0A2J6KBE6	0.0	A0A2J6KBE6_LACSA; Uncharacterized protein
STRING	VIT_09s0002g00800.t01	1e-131	(Vitis vinifera)