PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa007852

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

HB-other

Protein Properties

Length: 549aa MW: 61103.6 Da PI: 10.1038

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58690540	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-5799	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.7	3.4e-07	71	127	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ +++ F + +s++e++ +++ gLt +qV+ +F +R + ++ Lsa007852 71 KRPRDLLNPKAIKYMQSIFSVKDEISKKEIRAISALFGLTATQVRDFFTSQRSRVRR 127 799**************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-6	67	122	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.863	68	128	IPR001356	Homeobox domain
SMART	SM00389	0.0011	70	132	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.55E-7	70	130	IPR009057	Homeodomain-like
CDD	cd00086	8.54E-5	71	127	No hit	No description
Pfam	PF00046	1.2E-4	71	127	IPR001356	Homeobox domain
Gene3D	G3DSA:1.20.930.10	8.1E-6	225	312	IPR017923	Transcription factor IIS, N-terminal
SuperFamily	SSF47676	5.49E-6	226	315	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence Send to blast
MAISNANHQL ALVVPSNTTT SYEGLLESQK ELLSKQICEL QNIVSRQCKL TGVNPLSQEM 60 AAGALSIKIG KRPRDLLNPK AIKYMQSIFS VKDEISKKEI RAISALFGLT ATQVRDFFTS 120 QRSRVRRFIR LSREKATQSS ECVQDQDGPS SSNVDTLNHP VPLNSVGPSS VEAPSCSTQD 180 EVLPDTDDSD KYFIANIFSL MRKEETFSGQ VKLMEWILQI QSPSVLFWFL TNGGVMILAS 240 WLSQAAIEEQ TSVLHVILRV LCHLPLHKAL PAHMSAILQS VNKLRFYRVS DVSNRAKSLL 300 SRWSKMFARS QAMRKPNANI SAVDAQNEIL LKQSIGEIME NESFHSRIEN PAAIYSLLEN 360 SENSRSQSIK LLSSPSDDSN MKLLKGVSSS HGRERRKVQL VEQPGQRAGG RGPQVTRLFP 420 TAQGRPLSAD DIQKAKMRAQ FMRSKYGESY VGSHPHVKTE VPRVLMSATS SSSSSSSKAH 480 VHPKVEEHAT SSSSMVTPLA PKPKTPHVQV QPKVDEEKKE LVKNEVQEAE EPVWKKCKRL 540 PISWVNPPX

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence Send to blast

MAISNANHQL ALVVPSNTTT SYEGLLESQK ELLSKQICEL QNIVSRQCKL TGVNPLSQEM  60
AAGALSIKIG KRPRDLLNPK AIKYMQSIFS VKDEISKKEI RAISALFGLT ATQVRDFFTS  120
QRSRVRRFIR LSREKATQSS ECVQDQDGPS SSNVDTLNHP VPLNSVGPSS VEAPSCSTQD  180
EVLPDTDDSD KYFIANIFSL MRKEETFSGQ VKLMEWILQI QSPSVLFWFL TNGGVMILAS  240
WLSQAAIEEQ TSVLHVILRV LCHLPLHKAL PAHMSAILQS VNKLRFYRVS DVSNRAKSLL  300
SRWSKMFARS QAMRKPNANI SAVDAQNEIL LKQSIGEIME NESFHSRIEN PAAIYSLLEN  360
SENSRSQSIK LLSSPSDDSN MKLLKGVSSS HGRERRKVQL VEQPGQRAGG RGPQVTRLFP  420
TAQGRPLSAD DIQKAKMRAQ FMRSKYGESY VGSHPHVKTE VPRVLMSATS SSSSSSSKAH  480
VHPKVEEHAT SSSSMVTPLA PKPKTPHVQV QPKVDEEKKE LVKNEVQEAE EPVWKKCKRL  540
PISWVNPPX

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023747839.1	0.0	LOW QUALITY PROTEIN: homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	1e-174	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A2J6JJR9	0.0	A0A2J6JJR9_LACSA; Uncharacterized protein
STRING	XP_009604664.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-157	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]