PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa007757 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | MYB_related | ||||||||
Protein Properties | Length: 294aa MW: 32287.9 Da PI: 8.0216 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.1 | 9.6e-14 | 116 | 160 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky Lsa007757 116 PWTEDEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 160 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.713 | 11 | 24 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 17.406 | 109 | 165 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.35E-16 | 111 | 166 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.8E-17 | 112 | 163 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.6E-10 | 113 | 163 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-10 | 115 | 160 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.6E-11 | 116 | 160 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.68E-9 | 116 | 161 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MSQLQSQSHC CTQCGSNGHD SRSCLTAADD SSSDVSGIGA GEIMLFGVRV KVDPMRKSVS 60 MNNLSQYEHP ATRESSNNNI DVSAAVAVAA DTGYASADDA VRNQSNGSRE RKRGVPWTED 120 EHKLFLLGLQ KVGKGDWRGI SRNFVKTRTP TQVASHAQKY FLRRSNLNRR RRRSSLFDIT 180 TDSVAVMQTE EQQVHDVEKT QAVVQPSIPS SMTVSPVHFE NQVNNGSMLL IRSIPVFPTP 240 NPSTMVDLNL NQKYETSPLP VSLNLSLSFD HNHNQSSYQV ISGFNTGDGM ISVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023732114.1 | 0.0 | transcription factor MYB1R1-like | ||||
Refseq | XP_023732115.1 | 0.0 | transcription factor MYB1R1-like | ||||
Swissprot | Q2V9B0 | 1e-82 | MY1R1_SOLTU; Transcription factor MYB1R1 | ||||
TrEMBL | A0A2J6KJB8 | 0.0 | A0A2J6KJB8_LACSA; Uncharacterized protein | ||||
STRING | XP_009760664.1 | 1e-83 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74840.2 | 9e-51 | MYB_related family protein |
Publications ? help Back to Top | |||
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