PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa007712

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bZIP

Protein Properties

Length: 322aa MW: 35575.1 Da PI: 6.2418

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-38771	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32	2.6e-10	156	213	5	62
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 kr++r NR +A+rs +RK +i eLe+kv +L++e ++L +l + l se Lsa007712 156 KRAKRILANRQSASRSKERKARYISELERKVHTLQTEATTLSAQLALFQRDTNGLSSE 213 9*****************************************9998777666666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.3E-16	152	216	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.691	154	217	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.55E-10	156	206	No hit	No description
Pfam	PF00170	4.9E-9	156	213	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.6E-8	156	211	No hit	No description
CDD	cd14703	1.87E-22	157	206	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MQDPSNPNSI PPNAATFPFR PSHHRRAHSE VNFRLPEDLD LVSDSFDAPS GSFEEIGSED 60 DLFSTYMDME KLGSSLKDGG GVPDSSRGIN NVNVVGEGGA SDDNYGDDGD GEKGMSRPRH 120 RHSNSVDGSI FFRESIEAKK AMAPDKLAEL WTVDPKRAKR ILANRQSASR SKERKARYIS 180 ELERKVHTLQ TEATTLSAQL ALFQRDTNGL SSENTKLKIR LQAMEQQAHL RDALNEALKQ 240 EVVSAEKATG EMSRSSSSDG YNLGMHHVQY NQGNMFRNQN QTEPPQNHHH RLFSGDPLGR 300 FQGLDIKSEC VSLSAGESSG AF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024991016.1	1e-169	bZIP transcription factor 18-like
Swissprot	O22873	1e-102	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A2J6KY19	1e-179	A0A2J6KY19_LACSA; Uncharacterized protein
STRING	PGSC0003DMT400070968	1e-130	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-102	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]